miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24423 3' -62.5 NC_005264.1 + 125260 0.66 0.703682
Target:  5'- gCGGCCGccGCGAgacUUGCCGcCUCCg -3'
miRNA:   3'- -GCCGGCucCGCUaccAGCGGCuGGGG- -5'
24423 3' -62.5 NC_005264.1 + 6233 0.66 0.703682
Target:  5'- gCGGCCGccGCGAgacUUGCCGcCUCCg -3'
miRNA:   3'- -GCCGGCucCGCUaccAGCGGCuGGGG- -5'
24423 3' -62.5 NC_005264.1 + 56532 0.66 0.69424
Target:  5'- cCGGCgGcacAGGUGAUGGU-GCCGGCg-- -3'
miRNA:   3'- -GCCGgC---UCCGCUACCAgCGGCUGggg -5'
24423 3' -62.5 NC_005264.1 + 110588 0.66 0.69424
Target:  5'- uGGCCG-GGUGAguaGG-CGggGGCCCCg -3'
miRNA:   3'- gCCGGCuCCGCUa--CCaGCggCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 21451 0.66 0.69424
Target:  5'- uGGUCGGGGCucgcGAUGGUgucgaCGUgGAUUCCu -3'
miRNA:   3'- gCCGGCUCCG----CUACCA-----GCGgCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 87444 0.66 0.684753
Target:  5'- gCGGCCGcgcAGaCGGUGGcgCGCaccaCGACUCCg -3'
miRNA:   3'- -GCCGGC---UCcGCUACCa-GCG----GCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 82954 0.66 0.675228
Target:  5'- -cGCCu--GCGAcGGUCGCCGccgcGCCCCc -3'
miRNA:   3'- gcCGGcucCGCUaCCAGCGGC----UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 53211 0.66 0.665671
Target:  5'- uGGCCGAGGUaGUGGaCGCguauCUCCg -3'
miRNA:   3'- gCCGGCUCCGcUACCaGCGgcu-GGGG- -5'
24423 3' -62.5 NC_005264.1 + 130318 0.66 0.665671
Target:  5'- gGGCCGAGGaug-GGUCGCauCGugguCCUCu -3'
miRNA:   3'- gCCGGCUCCgcuaCCAGCG--GCu---GGGG- -5'
24423 3' -62.5 NC_005264.1 + 60888 0.66 0.65609
Target:  5'- uCGGCguaCGccGCGGUGGg-GCCGACgCCg -3'
miRNA:   3'- -GCCG---GCucCGCUACCagCGGCUGgGG- -5'
24423 3' -62.5 NC_005264.1 + 7951 0.66 0.65609
Target:  5'- aCGGCCGcGGCGucuuuGUCGCUG-CCUa -3'
miRNA:   3'- -GCCGGCuCCGCuac--CAGCGGCuGGGg -5'
24423 3' -62.5 NC_005264.1 + 123167 0.66 0.65609
Target:  5'- aCGGCCGcuugucGCGAUGcUUGCCG-CCCa -3'
miRNA:   3'- -GCCGGCuc----CGCUACcAGCGGCuGGGg -5'
24423 3' -62.5 NC_005264.1 + 40641 0.66 0.65609
Target:  5'- cCGcGCCGucGCGAcgcggagGGUCGCCGuuucgguuGCCgCCa -3'
miRNA:   3'- -GC-CGGCucCGCUa------CCAGCGGC--------UGG-GG- -5'
24423 3' -62.5 NC_005264.1 + 4140 0.66 0.65609
Target:  5'- aCGGCCGcuugucGCGAUGcUUGCCG-CCCa -3'
miRNA:   3'- -GCCGGCuc----CGCUACcAGCGGCuGGGg -5'
24423 3' -62.5 NC_005264.1 + 124165 0.67 0.646493
Target:  5'- gGGCaaCGuGGUGAUGGgCGCCG-CCgCg -3'
miRNA:   3'- gCCG--GCuCCGCUACCaGCGGCuGGgG- -5'
24423 3' -62.5 NC_005264.1 + 64414 0.67 0.646493
Target:  5'- aGGCCGAcgccgcgggcacGGCGAUGacGUCuGCCGcgGCUCUa -3'
miRNA:   3'- gCCGGCU------------CCGCUAC--CAG-CGGC--UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 52691 0.67 0.646493
Target:  5'- -aGCCGcGGCGGguuUCGCCGcccGCCCCc -3'
miRNA:   3'- gcCGGCuCCGCUaccAGCGGC---UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 121507 0.67 0.636885
Target:  5'- gCGGCUGcuucGaCGAUGGUCgGCgGGCCUCg -3'
miRNA:   3'- -GCCGGCu---CcGCUACCAG-CGgCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 77739 0.67 0.636885
Target:  5'- uGcGCCGAGG-GAc--UCGCCGGCCaCCa -3'
miRNA:   3'- gC-CGGCUCCgCUaccAGCGGCUGG-GG- -5'
24423 3' -62.5 NC_005264.1 + 95358 0.67 0.636885
Target:  5'- uCGG-CGGGGCGgcGG-C-CCGGCCUCg -3'
miRNA:   3'- -GCCgGCUCCGCuaCCaGcGGCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.