miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24423 3' -62.5 NC_005264.1 + 52128 0.68 0.560434
Target:  5'- aGGCCuccGGUGAUGGagaCGCUggagauuauaGACCCCa -3'
miRNA:   3'- gCCGGcu-CCGCUACCa--GCGG----------CUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 98084 0.68 0.564214
Target:  5'- gCGGCCaaaucuaucaGGGCGAUccuugcgcggggcacGG-CGCCGAgCCCCa -3'
miRNA:   3'- -GCCGGc---------UCCGCUA---------------CCaGCGGCU-GGGG- -5'
24423 3' -62.5 NC_005264.1 + 46256 0.68 0.532336
Target:  5'- cCGcGCCugGGGGCGuuuaggGGUCGCCGAgCUg -3'
miRNA:   3'- -GC-CGG--CUCCGCua----CCAGCGGCUgGGg -5'
24423 3' -62.5 NC_005264.1 + 96279 0.68 0.54165
Target:  5'- aGGUgGcGGCGGagcuugUGGaaaUCGCCGACgCCCg -3'
miRNA:   3'- gCCGgCuCCGCU------ACC---AGCGGCUG-GGG- -5'
24423 3' -62.5 NC_005264.1 + 94277 0.68 0.569895
Target:  5'- uGGCCGcacUGAcuaUGGUCGCCGAguauuucgaCCCCg -3'
miRNA:   3'- gCCGGCuccGCU---ACCAGCGGCU---------GGGG- -5'
24423 3' -62.5 NC_005264.1 + 149246 0.68 0.569895
Target:  5'- uGGCCGGuguGGCGcUGGg-GCCGAagCCCu -3'
miRNA:   3'- gCCGGCU---CCGCuACCagCGGCUg-GGG- -5'
24423 3' -62.5 NC_005264.1 + 37597 0.68 0.57369
Target:  5'- gCGGCCGcGGCGggGGgucaaaggacgcgucUCGCaCGGCCa- -3'
miRNA:   3'- -GCCGGCuCCGCuaCC---------------AGCG-GCUGGgg -5'
24423 3' -62.5 NC_005264.1 + 38205 0.68 0.579394
Target:  5'- gCGGcCCGAuagcGGCuccGGUCGCCGAUCUg -3'
miRNA:   3'- -GCC-GGCU----CCGcuaCCAGCGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 30429 0.68 0.560434
Target:  5'- gCGGCgGAGGaggucuCGggGGagcCGCgGGCCCCg -3'
miRNA:   3'- -GCCGgCUCC------GCuaCCa--GCGgCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 109630 0.68 0.560434
Target:  5'- gGGCgGGGggcGCGAcGGUUGCaacucgCGGCCCCg -3'
miRNA:   3'- gCCGgCUC---CGCUaCCAGCG------GCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 157232 0.68 0.579394
Target:  5'- gCGGcCCGAuagcGGCuccGGUCGCCGAUCUg -3'
miRNA:   3'- -GCC-GGCU----CCGcuaCCAGCGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 19887 0.68 0.578443
Target:  5'- gCGGCCGcgcuagccauuucGGGUGcuuuGUGGUggCGCCGugCCa -3'
miRNA:   3'- -GCCGGC-------------UCCGC----UACCA--GCGGCugGGg -5'
24423 3' -62.5 NC_005264.1 + 156624 0.68 0.57369
Target:  5'- gCGGCCGcGGCGggGGgucaaaggacgcgucUCGCaCGGCCa- -3'
miRNA:   3'- -GCCGGCuCCGCuaCC---------------AGCG-GCUGGgg -5'
24423 3' -62.5 NC_005264.1 + 16914 0.68 0.569895
Target:  5'- uCGGCCGcGGaCGAUGG-CGgCGGCguucuuCCCg -3'
miRNA:   3'- -GCCGGCuCC-GCUACCaGCgGCUG------GGG- -5'
24423 3' -62.5 NC_005264.1 + 40791 0.68 0.561379
Target:  5'- gGcGCCGAGaGCGGagccgcuugccgcggGGUCGCCGAgacucaagaUCCCg -3'
miRNA:   3'- gC-CGGCUC-CGCUa--------------CCAGCGGCU---------GGGG- -5'
24423 3' -62.5 NC_005264.1 + 158080 0.68 0.560434
Target:  5'- uGGCCGAguucgcgcGGCGGUccacccccGGaCGCCGGCUCg -3'
miRNA:   3'- gCCGGCU--------CCGCUA--------CCaGCGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 61363 0.68 0.560434
Target:  5'- uGGCCGucaaaGCGucggGGUCGCgGucuCCCCg -3'
miRNA:   3'- gCCGGCuc---CGCua--CCAGCGgCu--GGGG- -5'
24423 3' -62.5 NC_005264.1 + 6578 0.68 0.551018
Target:  5'- --aCCGAGGCGAUgacGGuUUGCauggaGGCCCCa -3'
miRNA:   3'- gccGGCUCCGCUA---CC-AGCGg----CUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 161284 0.68 0.532336
Target:  5'- cCGGCCGGGGCccgccuauugccGGcgcGGUcaaCGCCGcgggGCCCCa -3'
miRNA:   3'- -GCCGGCUCCG------------CUa--CCA---GCGGC----UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 31782 0.68 0.588927
Target:  5'- gCGGgCGcuucgccuaaGGGCGgcGGUCGCCG-CCgCa -3'
miRNA:   3'- -GCCgGC----------UCCGCuaCCAGCGGCuGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.