Results 81 - 100 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24423 | 3' | -62.5 | NC_005264.1 | + | 84323 | 0.7 | 0.460256 |
Target: 5'- gGGCaCGGcGCGAUGGUUaCUGGCCUCa -3' miRNA: 3'- gCCG-GCUcCGCUACCAGcGGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 44774 | 0.7 | 0.468995 |
Target: 5'- aGGugcCCGcGGCGAUcGUUGCCGACgCCg -3' miRNA: 3'- gCC---GGCuCCGCUAcCAGCGGCUGgGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 49377 | 0.71 | 0.41792 |
Target: 5'- uGGCaCGAccGCGG-GGUCGguCCGACCCCg -3' miRNA: 3'- gCCG-GCUc-CGCUaCCAGC--GGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 156429 | 0.71 | 0.41792 |
Target: 5'- gCGGCUGGcGGCGGUGaUCGCCucgauAUCCCa -3' miRNA: 3'- -GCCGGCU-CCGCUACcAGCGGc----UGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 144444 | 0.71 | 0.401661 |
Target: 5'- cCGGCCGGaaCGGUGGUCGuuGuCCgCCu -3' miRNA: 3'- -GCCGGCUccGCUACCAGCggCuGG-GG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 37426 | 0.71 | 0.400859 |
Target: 5'- uGGCCGuGgagcagcacgaGCGGcUGGUCGCCGaguucaugcugcaGCCCCu -3' miRNA: 3'- gCCGGCuC-----------CGCU-ACCAGCGGC-------------UGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 80500 | 0.71 | 0.381136 |
Target: 5'- aGGCCGAGagcgagaacaucgccGCGGUGcgcaacGUCGUCGcCCCCa -3' miRNA: 3'- gCCGGCUC---------------CGCUAC------CAGCGGCuGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 156453 | 0.71 | 0.400859 |
Target: 5'- uGGCCGuGgagcagcacgaGCGGcUGGUCGCCGaguucaugcugcaGCCCCu -3' miRNA: 3'- gCCGGCuC-----------CGCU-ACCAGCGGC-------------UGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 33626 | 0.71 | 0.40974 |
Target: 5'- uCGGCCaGAuuggcGGCGAcgguUGGUCgacggugcuaGCCGACCCa -3' miRNA: 3'- -GCCGG-CU-----CCGCU----ACCAG----------CGGCUGGGg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 122116 | 0.71 | 0.40974 |
Target: 5'- gCGGCCGAggacccguucgGGCGAU--UC-CCGGCCCCc -3' miRNA: 3'- -GCCGGCU-----------CCGCUAccAGcGGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 3089 | 0.71 | 0.40974 |
Target: 5'- gCGGCCGAggacccguucgGGCGAU--UC-CCGGCCCCc -3' miRNA: 3'- -GCCGGCU-----------CCGCUAccAGcGGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 93824 | 0.72 | 0.326665 |
Target: 5'- uGGCCGAGGUGgcGGUUcgguugGCCGugCgCg -3' miRNA: 3'- gCCGGCUCCGCuaCCAG------CGGCugGgG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 27507 | 0.72 | 0.362821 |
Target: 5'- aGGCgcaGuGGCGGgcugGGUCGCCGuaACCCUc -3' miRNA: 3'- gCCGg--CuCCGCUa---CCAGCGGC--UGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 60541 | 0.72 | 0.370377 |
Target: 5'- cCGGCCGAGGUGucgucgagGGUCGuCCuGACgUCCu -3' miRNA: 3'- -GCCGGCUCCGCua------CCAGC-GG-CUG-GGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 80749 | 0.73 | 0.31297 |
Target: 5'- aCGGCCaAGGCGGgaa-CGCuCGACCCCu -3' miRNA: 3'- -GCCGGcUCCGCUaccaGCG-GCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 30921 | 0.73 | 0.313645 |
Target: 5'- aGGCCG-GGCGGcucgacguccguccgGGUCGUcaucggCGACCCCg -3' miRNA: 3'- gCCGGCuCCGCUa--------------CCAGCG------GCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 48621 | 0.73 | 0.299715 |
Target: 5'- aGGCCGGGGaGGUGGgcaaGCCGGCgUCg -3' miRNA: 3'- gCCGGCUCCgCUACCag--CGGCUGgGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 20138 | 0.73 | 0.293251 |
Target: 5'- gCGGgC-AGGCGAUGGcgcgcCGCCGGCgCCCa -3' miRNA: 3'- -GCCgGcUCCGCUACCa----GCGGCUG-GGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 125017 | 0.74 | 0.256751 |
Target: 5'- gGGCCaAGGgGA--GUCGUCGGCCCCg -3' miRNA: 3'- gCCGGcUCCgCUacCAGCGGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 5990 | 0.74 | 0.256751 |
Target: 5'- gGGCCaAGGgGA--GUCGUCGGCCCCg -3' miRNA: 3'- gCCGGcUCCgCUacCAGCGGCUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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