Results 21 - 40 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24423 | 3' | -62.5 | NC_005264.1 | + | 44774 | 0.7 | 0.468995 |
Target: 5'- aGGugcCCGcGGCGAUcGUUGCCGACgCCg -3' miRNA: 3'- gCC---GGCuCCGCUAcCAGCGGCUGgGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 80627 | 0.7 | 0.460256 |
Target: 5'- gGGCCccGAGGaCGAUGGaCGCgCGGCCa- -3' miRNA: 3'- gCCGG--CUCC-GCUACCaGCG-GCUGGgg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 69755 | 0.7 | 0.443043 |
Target: 5'- gCGaGCUGAGaagcCGA-GGUCGCCGcgGCCCCu -3' miRNA: 3'- -GC-CGGCUCc---GCUaCCAGCGGC--UGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 123493 | 0.7 | 0.434573 |
Target: 5'- uGGCCGcgcgguugcuGGGCGAUGuGcUCGCgGugUCCa -3' miRNA: 3'- gCCGGC----------UCCGCUAC-C-AGCGgCugGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 131227 | 0.7 | 0.434573 |
Target: 5'- uGGUCGcaGGGCGAUGcG-CGCCG-CCUCg -3' miRNA: 3'- gCCGGC--UCCGCUAC-CaGCGGCuGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 16572 | 0.7 | 0.443043 |
Target: 5'- gGcGCCGGGGCGgcGG-CGCacauGACUCCg -3' miRNA: 3'- gC-CGGCUCCGCuaCCaGCGg---CUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 12200 | 0.7 | 0.434573 |
Target: 5'- uGGUCGcaGGGCGAUGcG-CGCCG-CCUCg -3' miRNA: 3'- gCCGGC--UCCGCUAC-CaGCGGCuGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 47952 | 0.7 | 0.443043 |
Target: 5'- uCGGCaCGAGcGUGGggaaGGUgGCCGAUCCg -3' miRNA: 3'- -GCCG-GCUC-CGCUa---CCAgCGGCUGGGg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 67463 | 0.7 | 0.457652 |
Target: 5'- gCGGCCagcucgugaaacccGAGGCcg-GGcCGCCG-CCCCg -3' miRNA: 3'- -GCCGG--------------CUCCGcuaCCaGCGGCuGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 84323 | 0.7 | 0.460256 |
Target: 5'- gGGCaCGGcGCGAUGGUUaCUGGCCUCa -3' miRNA: 3'- gCCG-GCUcCGCUACCAGcGGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 35781 | 0.69 | 0.499318 |
Target: 5'- aGGCgGAGggcGCGGUGGcgccgUCguggcgggcgccucuGCCGGCCCCg -3' miRNA: 3'- gCCGgCUC---CGCUACC-----AG---------------CGGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 149947 | 0.69 | 0.475162 |
Target: 5'- aGGCCG-GGCGGcUcgacgguccguccgGGUCGUcaucggCGACCCCg -3' miRNA: 3'- gCCGGCuCCGCU-A--------------CCAGCG------GCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 124304 | 0.69 | 0.477818 |
Target: 5'- gCGGCCGGacGGCGGggcGG-CgGCUGACCCg -3' miRNA: 3'- -GCCGGCU--CCGCUa--CCaG-CGGCUGGGg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 118221 | 0.69 | 0.513887 |
Target: 5'- uCGGCCGcGGUGAUGucCGCCaccaggaacaagGACCCUa -3' miRNA: 3'- -GCCGGCuCCGCUACcaGCGG------------CUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 93079 | 0.69 | 0.486722 |
Target: 5'- gGGCCGcGGCGAccucGGcuucucagcUCGCCGACaUCCg -3' miRNA: 3'- gCCGGCuCCGCUa---CC---------AGCGGCUG-GGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 108674 | 0.69 | 0.486722 |
Target: 5'- cCGGCCaGGGCGcgGuuuccgcaccGUCGauguagucggcaCCGACCCCg -3' miRNA: 3'- -GCCGGcUCCGCuaC----------CAGC------------GGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 154807 | 0.69 | 0.499318 |
Target: 5'- aGGCgGAGggcGCGGUGGcgccgUCguggcgggcgccucuGCCGGCCCCg -3' miRNA: 3'- gCCGgCUC---CGCUACC-----AG---------------CGGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 36099 | 0.69 | 0.513887 |
Target: 5'- uCGGCgCGGcuGGCaGAUGGguacUCGCCGGCCg- -3' miRNA: 3'- -GCCG-GCU--CCG-CUACC----AGCGGCUGGgg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 35897 | 0.69 | 0.52308 |
Target: 5'- uGGgCGuGGUGucggGGUCGCUGGCUCUc -3' miRNA: 3'- gCCgGCuCCGCua--CCAGCGGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 86324 | 0.69 | 0.486722 |
Target: 5'- -cGCCGAagcGGCGGUagacGGUCGCCuauuCCCCc -3' miRNA: 3'- gcCGGCU---CCGCUA----CCAGCGGcu--GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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