Results 61 - 80 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24423 | 3' | -62.5 | NC_005264.1 | + | 161284 | 0.68 | 0.532336 |
Target: 5'- cCGGCCGGGGCccgccuauugccGGcgcGGUcaaCGCCGcgggGCCCCa -3' miRNA: 3'- -GCCGGCUCCG------------CUa--CCA---GCGGC----UGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 150808 | 0.68 | 0.588927 |
Target: 5'- gCGGgCGcuucgccuaaGGGCGgcGGUCGCCG-CCgCa -3' miRNA: 3'- -GCCgGC----------UCCGCuaCCAGCGGCuGGgG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 16914 | 0.68 | 0.569895 |
Target: 5'- uCGGCCGcGGaCGAUGG-CGgCGGCguucuuCCCg -3' miRNA: 3'- -GCCGGCuCC-GCUACCaGCgGCUG------GGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 156624 | 0.68 | 0.57369 |
Target: 5'- gCGGCCGcGGCGggGGgucaaaggacgcgucUCGCaCGGCCa- -3' miRNA: 3'- -GCCGGCuCCGCuaCC---------------AGCG-GCUGGgg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 157232 | 0.68 | 0.579394 |
Target: 5'- gCGGcCCGAuagcGGCuccGGUCGCCGAUCUg -3' miRNA: 3'- -GCC-GGCU----CCGcuaCCAGCGGCUGGGg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 61363 | 0.68 | 0.560434 |
Target: 5'- uGGCCGucaaaGCGucggGGUCGCgGucuCCCCg -3' miRNA: 3'- gCCGGCuc---CGCua--CCAGCGgCu--GGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 52691 | 0.67 | 0.646493 |
Target: 5'- -aGCCGcGGCGGguuUCGCCGcccGCCCCc -3' miRNA: 3'- gcCGGCuCCGCUaccAGCGGC---UGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 64414 | 0.67 | 0.646493 |
Target: 5'- aGGCCGAcgccgcgggcacGGCGAUGacGUCuGCCGcgGCUCUa -3' miRNA: 3'- gCCGGCU------------CCGCUAC--CAG-CGGC--UGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 121507 | 0.67 | 0.636885 |
Target: 5'- gCGGCUGcuucGaCGAUGGUCgGCgGGCCUCg -3' miRNA: 3'- -GCCGGCu---CcGCUACCAG-CGgCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 122493 | 0.67 | 0.598487 |
Target: 5'- gGGUCucgGGGGCGAUGGgcUUGCCG-CCgCa -3' miRNA: 3'- gCCGG---CUCCGCUACC--AGCGGCuGGgG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 2480 | 0.67 | 0.636885 |
Target: 5'- gCGGCUGcuucGaCGAUGGUCgGCgGGCCUCg -3' miRNA: 3'- -GCCGGCu---CcGCUACCAG-CGgCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 156150 | 0.67 | 0.608069 |
Target: 5'- aGGgCGAGGCGGccGUC-UCGGCCUCg -3' miRNA: 3'- gCCgGCUCCGCUacCAGcGGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 77739 | 0.67 | 0.636885 |
Target: 5'- uGcGCCGAGG-GAc--UCGCCGGCCaCCa -3' miRNA: 3'- gC-CGGCUCCgCUaccAGCGGCUGG-GG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 75435 | 0.67 | 0.635924 |
Target: 5'- gGGCCGugauucaGGGUGAU-GUUGauGGCCCCa -3' miRNA: 3'- gCCGGC-------UCCGCUAcCAGCggCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 108666 | 0.67 | 0.627274 |
Target: 5'- -cGCCGAGGCGA-GGUUGgCGguguGCgCCa -3' miRNA: 3'- gcCGGCUCCGCUaCCAGCgGC----UGgGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 95358 | 0.67 | 0.636885 |
Target: 5'- uCGG-CGGGGCGgcGG-C-CCGGCCUCg -3' miRNA: 3'- -GCCgGCUCCGCuaCCaGcGGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 116658 | 0.67 | 0.627274 |
Target: 5'- aGGuuGuagauGGCGGggcGGcCGCCGAUCCa -3' miRNA: 3'- gCCggCu----CCGCUa--CCaGCGGCUGGGg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 140042 | 0.67 | 0.617667 |
Target: 5'- aCGGUCccucugacaGGGGCGugagcaGuGUCGCCGcGCCCCu -3' miRNA: 3'- -GCCGG---------CUCCGCua----C-CAGCGGC-UGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 133958 | 0.67 | 0.636885 |
Target: 5'- uGGCCGGGGUcuucgcGGUGGcguUCGCCGcGCggUCCa -3' miRNA: 3'- gCCGGCUCCG------CUACC---AGCGGC-UG--GGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 124165 | 0.67 | 0.646493 |
Target: 5'- gGGCaaCGuGGUGAUGGgCGCCG-CCgCg -3' miRNA: 3'- gCCG--GCuCCGCUACCaGCGGCuGGgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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