miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24423 3' -62.5 NC_005264.1 + 99801 1.11 0.00071
Target:  5'- gCGGCCGAGGCGAUGGUCGCCGACCCCg -3'
miRNA:   3'- -GCCGGCUCCGCUACCAGCGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 131991 0.76 0.19045
Target:  5'- aGGCCGGuGGCGGUGGgcCGaCCGGCgCCa -3'
miRNA:   3'- gCCGGCU-CCGCUACCa-GC-GGCUGgGG- -5'
24423 3' -62.5 NC_005264.1 + 125017 0.74 0.256751
Target:  5'- gGGCCaAGGgGA--GUCGUCGGCCCCg -3'
miRNA:   3'- gCCGGcUCCgCUacCAGCGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 5990 0.74 0.256751
Target:  5'- gGGCCaAGGgGA--GUCGUCGGCCCCg -3'
miRNA:   3'- gCCGGcUCCgCUacCAGCGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 20138 0.73 0.293251
Target:  5'- gCGGgC-AGGCGAUGGcgcgcCGCCGGCgCCCa -3'
miRNA:   3'- -GCCgGcUCCGCUACCa----GCGGCUG-GGG- -5'
24423 3' -62.5 NC_005264.1 + 48621 0.73 0.299715
Target:  5'- aGGCCGGGGaGGUGGgcaaGCCGGCgUCg -3'
miRNA:   3'- gCCGGCUCCgCUACCag--CGGCUGgGG- -5'
24423 3' -62.5 NC_005264.1 + 80749 0.73 0.31297
Target:  5'- aCGGCCaAGGCGGgaa-CGCuCGACCCCu -3'
miRNA:   3'- -GCCGGcUCCGCUaccaGCG-GCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 30921 0.73 0.313645
Target:  5'- aGGCCG-GGCGGcucgacguccguccgGGUCGUcaucggCGACCCCg -3'
miRNA:   3'- gCCGGCuCCGCUa--------------CCAGCG------GCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 93824 0.72 0.326665
Target:  5'- uGGCCGAGGUGgcGGUUcgguugGCCGugCgCg -3'
miRNA:   3'- gCCGGCUCCGCuaCCAG------CGGCugGgG- -5'
24423 3' -62.5 NC_005264.1 + 27507 0.72 0.362821
Target:  5'- aGGCgcaGuGGCGGgcugGGUCGCCGuaACCCUc -3'
miRNA:   3'- gCCGg--CuCCGCUa---CCAGCGGC--UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 60541 0.72 0.370377
Target:  5'- cCGGCCGAGGUGucgucgagGGUCGuCCuGACgUCCu -3'
miRNA:   3'- -GCCGGCUCCGCua------CCAGC-GG-CUG-GGG- -5'
24423 3' -62.5 NC_005264.1 + 80500 0.71 0.381136
Target:  5'- aGGCCGAGagcgagaacaucgccGCGGUGcgcaacGUCGUCGcCCCCa -3'
miRNA:   3'- gCCGGCUC---------------CGCUAC------CAGCGGCuGGGG- -5'
24423 3' -62.5 NC_005264.1 + 37426 0.71 0.400859
Target:  5'- uGGCCGuGgagcagcacgaGCGGcUGGUCGCCGaguucaugcugcaGCCCCu -3'
miRNA:   3'- gCCGGCuC-----------CGCU-ACCAGCGGC-------------UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 156453 0.71 0.400859
Target:  5'- uGGCCGuGgagcagcacgaGCGGcUGGUCGCCGaguucaugcugcaGCCCCu -3'
miRNA:   3'- gCCGGCuC-----------CGCU-ACCAGCGGC-------------UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 144444 0.71 0.401661
Target:  5'- cCGGCCGGaaCGGUGGUCGuuGuCCgCCu -3'
miRNA:   3'- -GCCGGCUccGCUACCAGCggCuGG-GG- -5'
24423 3' -62.5 NC_005264.1 + 3089 0.71 0.40974
Target:  5'- gCGGCCGAggacccguucgGGCGAU--UC-CCGGCCCCc -3'
miRNA:   3'- -GCCGGCU-----------CCGCUAccAGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 33626 0.71 0.40974
Target:  5'- uCGGCCaGAuuggcGGCGAcgguUGGUCgacggugcuaGCCGACCCa -3'
miRNA:   3'- -GCCGG-CU-----CCGCU----ACCAG----------CGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 122116 0.71 0.40974
Target:  5'- gCGGCCGAggacccguucgGGCGAU--UC-CCGGCCCCc -3'
miRNA:   3'- -GCCGGCU-----------CCGCUAccAGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 49377 0.71 0.41792
Target:  5'- uGGCaCGAccGCGG-GGUCGguCCGACCCCg -3'
miRNA:   3'- gCCG-GCUc-CGCUaCCAGC--GGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 156429 0.71 0.41792
Target:  5'- gCGGCUGGcGGCGGUGaUCGCCucgauAUCCCa -3'
miRNA:   3'- -GCCGGCU-CCGCUACcAGCGGc----UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.