miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24423 3' -62.5 NC_005264.1 + 95358 0.67 0.636885
Target:  5'- uCGG-CGGGGCGgcGG-C-CCGGCCUCg -3'
miRNA:   3'- -GCCgGCUCCGCuaCCaGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 121507 0.67 0.636885
Target:  5'- gCGGCUGcuucGaCGAUGGUCgGCgGGCCUCg -3'
miRNA:   3'- -GCCGGCu---CcGCUACCAG-CGgCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 75435 0.67 0.635924
Target:  5'- gGGCCGugauucaGGGUGAU-GUUGauGGCCCCa -3'
miRNA:   3'- gCCGGC-------UCCGCUAcCAGCggCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 69833 0.67 0.631118
Target:  5'- -cGCCGGGGUGAaGGcCGCCcugcuuggggcaucGCCCCu -3'
miRNA:   3'- gcCGGCUCCGCUaCCaGCGGc-------------UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 108666 0.67 0.627274
Target:  5'- -cGCCGAGGCGA-GGUUGgCGguguGCgCCa -3'
miRNA:   3'- gcCGGCUCCGCUaCCAGCgGC----UGgGG- -5'
24423 3' -62.5 NC_005264.1 + 25621 0.67 0.627274
Target:  5'- gCGGaacaCGGcGGCGGUGGg-GCCGcGCUCCg -3'
miRNA:   3'- -GCCg---GCU-CCGCUACCagCGGC-UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 116658 0.67 0.627274
Target:  5'- aGGuuGuagauGGCGGggcGGcCGCCGAUCCa -3'
miRNA:   3'- gCCggCu----CCGCUa--CCaGCGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 142601 0.67 0.627274
Target:  5'- cCGGCCGcGaCGAUGGccaCGCCGggcuACCUCg -3'
miRNA:   3'- -GCCGGCuCcGCUACCa--GCGGC----UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 140042 0.67 0.617667
Target:  5'- aCGGUCccucugacaGGGGCGugagcaGuGUCGCCGcGCCCCu -3'
miRNA:   3'- -GCCGG---------CUCCGCua----C-CAGCGGC-UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 3763 0.67 0.608069
Target:  5'- -cGCCGGGGCGcugcgggcccuUGGUCGaCCG-CCgCCg -3'
miRNA:   3'- gcCGGCUCCGCu----------ACCAGC-GGCuGG-GG- -5'
24423 3' -62.5 NC_005264.1 + 122789 0.67 0.608069
Target:  5'- -cGCCGGGGCGcugcgggcccuUGGUCGaCCG-CCgCCg -3'
miRNA:   3'- gcCGGCUCCGCu----------ACCAGC-GGCuGG-GG- -5'
24423 3' -62.5 NC_005264.1 + 156150 0.67 0.608069
Target:  5'- aGGgCGAGGCGGccGUC-UCGGCCUCg -3'
miRNA:   3'- gCCgGCUCCGCUacCAGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 27626 0.67 0.608069
Target:  5'- uGGCU-AGGCGGcUGGUCGCgCGAaCUCg -3'
miRNA:   3'- gCCGGcUCCGCU-ACCAGCG-GCUgGGG- -5'
24423 3' -62.5 NC_005264.1 + 37123 0.67 0.608069
Target:  5'- aGGgCGAGGCGGccGUC-UCGGCCUCg -3'
miRNA:   3'- gCCgGCUCCGCUacCAGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 122493 0.67 0.598487
Target:  5'- gGGUCucgGGGGCGAUGGgcUUGCCG-CCgCa -3'
miRNA:   3'- gCCGG---CUCCGCUACC--AGCGGCuGGgG- -5'
24423 3' -62.5 NC_005264.1 + 3466 0.67 0.598487
Target:  5'- gGGUCucgGGGGCGAUGGgcUUGCCG-CCgCa -3'
miRNA:   3'- gCCGG---CUCCGCUACC--AGCGGCuGGgG- -5'
24423 3' -62.5 NC_005264.1 + 31782 0.68 0.588927
Target:  5'- gCGGgCGcuucgccuaaGGGCGgcGGUCGCCG-CCgCa -3'
miRNA:   3'- -GCCgGC----------UCCGCuaCCAGCGGCuGGgG- -5'
24423 3' -62.5 NC_005264.1 + 150808 0.68 0.588927
Target:  5'- gCGGgCGcuucgccuaaGGGCGgcGGUCGCCG-CCgCa -3'
miRNA:   3'- -GCCgGC----------UCCGCuaCCAGCGGCuGGgG- -5'
24423 3' -62.5 NC_005264.1 + 155123 0.68 0.583203
Target:  5'- uGGCCaugcgcagcguuaggGAGGCGAuagugcuuuugUGGUCacuguuguuuGCCGACgCCg -3'
miRNA:   3'- gCCGG---------------CUCCGCU-----------ACCAG----------CGGCUGgGG- -5'
24423 3' -62.5 NC_005264.1 + 157232 0.68 0.579394
Target:  5'- gCGGcCCGAuagcGGCuccGGUCGCCGAUCUg -3'
miRNA:   3'- -GCC-GGCU----CCGcuaCCAGCGGCUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.