miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24423 3' -62.5 NC_005264.1 + 2480 0.67 0.636885
Target:  5'- gCGGCUGcuucGaCGAUGGUCgGCgGGCCUCg -3'
miRNA:   3'- -GCCGGCu---CcGCUACCAG-CGgCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 3089 0.71 0.40974
Target:  5'- gCGGCCGAggacccguucgGGCGAU--UC-CCGGCCCCc -3'
miRNA:   3'- -GCCGGCU-----------CCGCUAccAGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 3466 0.67 0.598487
Target:  5'- gGGUCucgGGGGCGAUGGgcUUGCCG-CCgCa -3'
miRNA:   3'- gCCGG---CUCCGCUACC--AGCGGCuGGgG- -5'
24423 3' -62.5 NC_005264.1 + 3763 0.67 0.608069
Target:  5'- -cGCCGGGGCGcugcgggcccuUGGUCGaCCG-CCgCCg -3'
miRNA:   3'- gcCGGCUCCGCu----------ACCAGC-GGCuGG-GG- -5'
24423 3' -62.5 NC_005264.1 + 4140 0.66 0.65609
Target:  5'- aCGGCCGcuugucGCGAUGcUUGCCG-CCCa -3'
miRNA:   3'- -GCCGGCuc----CGCUACcAGCGGCuGGGg -5'
24423 3' -62.5 NC_005264.1 + 5277 0.69 0.477818
Target:  5'- gCGGCCGGacGGCGGggcGG-CgGCUGACCCg -3'
miRNA:   3'- -GCCGGCU--CCGCUa--CCaG-CGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 5990 0.74 0.256751
Target:  5'- gGGCCaAGGgGA--GUCGUCGGCCCCg -3'
miRNA:   3'- gCCGGcUCCgCUacCAGCGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 6233 0.66 0.703682
Target:  5'- gCGGCCGccGCGAgacUUGCCGcCUCCg -3'
miRNA:   3'- -GCCGGCucCGCUaccAGCGGCuGGGG- -5'
24423 3' -62.5 NC_005264.1 + 6578 0.68 0.551018
Target:  5'- --aCCGAGGCGAUgacGGuUUGCauggaGGCCCCa -3'
miRNA:   3'- gccGGCUCCGCUA---CC-AGCGg----CUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 7951 0.66 0.65609
Target:  5'- aCGGCCGcGGCGucuuuGUCGCUG-CCUa -3'
miRNA:   3'- -GCCGGCuCCGCuac--CAGCGGCuGGGg -5'
24423 3' -62.5 NC_005264.1 + 12200 0.7 0.434573
Target:  5'- uGGUCGcaGGGCGAUGcG-CGCCG-CCUCg -3'
miRNA:   3'- gCCGGC--UCCGCUAC-CaGCGGCuGGGG- -5'
24423 3' -62.5 NC_005264.1 + 16572 0.7 0.443043
Target:  5'- gGcGCCGGGGCGgcGG-CGCacauGACUCCg -3'
miRNA:   3'- gC-CGGCUCCGCuaCCaGCGg---CUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 16914 0.68 0.569895
Target:  5'- uCGGCCGcGGaCGAUGG-CGgCGGCguucuuCCCg -3'
miRNA:   3'- -GCCGGCuCC-GCUACCaGCgGCUG------GGG- -5'
24423 3' -62.5 NC_005264.1 + 19887 0.68 0.578443
Target:  5'- gCGGCCGcgcuagccauuucGGGUGcuuuGUGGUggCGCCGugCCa -3'
miRNA:   3'- -GCCGGC-------------UCCGC----UACCA--GCGGCugGGg -5'
24423 3' -62.5 NC_005264.1 + 20138 0.73 0.293251
Target:  5'- gCGGgC-AGGCGAUGGcgcgcCGCCGGCgCCCa -3'
miRNA:   3'- -GCCgGcUCCGCUACCa----GCGGCUG-GGG- -5'
24423 3' -62.5 NC_005264.1 + 21451 0.66 0.69424
Target:  5'- uGGUCGGGGCucgcGAUGGUgucgaCGUgGAUUCCu -3'
miRNA:   3'- gCCGGCUCCG----CUACCA-----GCGgCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 25621 0.67 0.627274
Target:  5'- gCGGaacaCGGcGGCGGUGGg-GCCGcGCUCCg -3'
miRNA:   3'- -GCCg---GCU-CCGCUACCagCGGC-UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 27507 0.72 0.362821
Target:  5'- aGGCgcaGuGGCGGgcugGGUCGCCGuaACCCUc -3'
miRNA:   3'- gCCGg--CuCCGCUa---CCAGCGGC--UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 27626 0.67 0.608069
Target:  5'- uGGCU-AGGCGGcUGGUCGCgCGAaCUCg -3'
miRNA:   3'- gCCGGcUCCGCU-ACCAGCG-GCUgGGG- -5'
24423 3' -62.5 NC_005264.1 + 30429 0.68 0.560434
Target:  5'- gCGGCgGAGGaggucuCGggGGagcCGCgGGCCCCg -3'
miRNA:   3'- -GCCGgCUCC------GCuaCCa--GCGgCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.