miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24423 3' -62.5 NC_005264.1 + 30921 0.73 0.313645
Target:  5'- aGGCCG-GGCGGcucgacguccguccgGGUCGUcaucggCGACCCCg -3'
miRNA:   3'- gCCGGCuCCGCUa--------------CCAGCG------GCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 31782 0.68 0.588927
Target:  5'- gCGGgCGcuucgccuaaGGGCGgcGGUCGCCG-CCgCa -3'
miRNA:   3'- -GCCgGC----------UCCGCuaCCAGCGGCuGGgG- -5'
24423 3' -62.5 NC_005264.1 + 33626 0.71 0.40974
Target:  5'- uCGGCCaGAuuggcGGCGAcgguUGGUCgacggugcuaGCCGACCCa -3'
miRNA:   3'- -GCCGG-CU-----CCGCU----ACCAG----------CGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 35781 0.69 0.499318
Target:  5'- aGGCgGAGggcGCGGUGGcgccgUCguggcgggcgccucuGCCGGCCCCg -3'
miRNA:   3'- gCCGgCUC---CGCUACC-----AG---------------CGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 35897 0.69 0.52308
Target:  5'- uGGgCGuGGUGucggGGUCGCUGGCUCUc -3'
miRNA:   3'- gCCgGCuCCGCua--CCAGCGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 36099 0.69 0.513887
Target:  5'- uCGGCgCGGcuGGCaGAUGGguacUCGCCGGCCg- -3'
miRNA:   3'- -GCCG-GCU--CCG-CUACC----AGCGGCUGGgg -5'
24423 3' -62.5 NC_005264.1 + 37123 0.67 0.608069
Target:  5'- aGGgCGAGGCGGccGUC-UCGGCCUCg -3'
miRNA:   3'- gCCgGCUCCGCUacCAGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 37426 0.71 0.400859
Target:  5'- uGGCCGuGgagcagcacgaGCGGcUGGUCGCCGaguucaugcugcaGCCCCu -3'
miRNA:   3'- gCCGGCuC-----------CGCU-ACCAGCGGC-------------UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 37597 0.68 0.57369
Target:  5'- gCGGCCGcGGCGggGGgucaaaggacgcgucUCGCaCGGCCa- -3'
miRNA:   3'- -GCCGGCuCCGCuaCC---------------AGCG-GCUGGgg -5'
24423 3' -62.5 NC_005264.1 + 38205 0.68 0.579394
Target:  5'- gCGGcCCGAuagcGGCuccGGUCGCCGAUCUg -3'
miRNA:   3'- -GCC-GGCU----CCGcuaCCAGCGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 39053 0.68 0.560434
Target:  5'- uGGCCGAguucgcgcGGCGGUccacccccGGaCGCCGGCUCg -3'
miRNA:   3'- gCCGGCU--------CCGCUA--------CCaGCGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 40641 0.66 0.65609
Target:  5'- cCGcGCCGucGCGAcgcggagGGUCGCCGuuucgguuGCCgCCa -3'
miRNA:   3'- -GC-CGGCucCGCUa------CCAGCGGC--------UGG-GG- -5'
24423 3' -62.5 NC_005264.1 + 40791 0.68 0.561379
Target:  5'- gGcGCCGAGaGCGGagccgcuugccgcggGGUCGCCGAgacucaagaUCCCg -3'
miRNA:   3'- gC-CGGCUC-CGCUa--------------CCAGCGGCU---------GGGG- -5'
24423 3' -62.5 NC_005264.1 + 42257 0.68 0.532336
Target:  5'- cCGGCCGGGGCccgccuauugccGGcgcGGUcaaCGCCGcgggGCCCCa -3'
miRNA:   3'- -GCCGGCUCCG------------CUa--CCA---GCGGC----UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 44774 0.7 0.468995
Target:  5'- aGGugcCCGcGGCGAUcGUUGCCGACgCCg -3'
miRNA:   3'- gCC---GGCuCCGCUAcCAGCGGCUGgGG- -5'
24423 3' -62.5 NC_005264.1 + 46256 0.68 0.532336
Target:  5'- cCGcGCCugGGGGCGuuuaggGGUCGCCGAgCUg -3'
miRNA:   3'- -GC-CGG--CUCCGCua----CCAGCGGCUgGGg -5'
24423 3' -62.5 NC_005264.1 + 47952 0.7 0.443043
Target:  5'- uCGGCaCGAGcGUGGggaaGGUgGCCGAUCCg -3'
miRNA:   3'- -GCCG-GCUC-CGCUa---CCAgCGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 48621 0.73 0.299715
Target:  5'- aGGCCGGGGaGGUGGgcaaGCCGGCgUCg -3'
miRNA:   3'- gCCGGCUCCgCUACCag--CGGCUGgGG- -5'
24423 3' -62.5 NC_005264.1 + 49377 0.71 0.41792
Target:  5'- uGGCaCGAccGCGG-GGUCGguCCGACCCCg -3'
miRNA:   3'- gCCG-GCUc-CGCUaCCAGC--GGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 52128 0.68 0.560434
Target:  5'- aGGCCuccGGUGAUGGagaCGCUggagauuauaGACCCCa -3'
miRNA:   3'- gCCGGcu-CCGCUACCa--GCGG----------CUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.