miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24423 3' -62.5 NC_005264.1 + 52691 0.67 0.646493
Target:  5'- -aGCCGcGGCGGguuUCGCCGcccGCCCCc -3'
miRNA:   3'- gcCGGCuCCGCUaccAGCGGC---UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 53211 0.66 0.665671
Target:  5'- uGGCCGAGGUaGUGGaCGCguauCUCCg -3'
miRNA:   3'- gCCGGCUCCGcUACCaGCGgcu-GGGG- -5'
24423 3' -62.5 NC_005264.1 + 56532 0.66 0.69424
Target:  5'- cCGGCgGcacAGGUGAUGGU-GCCGGCg-- -3'
miRNA:   3'- -GCCGgC---UCCGCUACCAgCGGCUGggg -5'
24423 3' -62.5 NC_005264.1 + 60541 0.72 0.370377
Target:  5'- cCGGCCGAGGUGucgucgagGGUCGuCCuGACgUCCu -3'
miRNA:   3'- -GCCGGCUCCGCua------CCAGC-GG-CUG-GGG- -5'
24423 3' -62.5 NC_005264.1 + 60888 0.66 0.65609
Target:  5'- uCGGCguaCGccGCGGUGGg-GCCGACgCCg -3'
miRNA:   3'- -GCCG---GCucCGCUACCagCGGCUGgGG- -5'
24423 3' -62.5 NC_005264.1 + 61363 0.68 0.560434
Target:  5'- uGGCCGucaaaGCGucggGGUCGCgGucuCCCCg -3'
miRNA:   3'- gCCGGCuc---CGCua--CCAGCGgCu--GGGG- -5'
24423 3' -62.5 NC_005264.1 + 64414 0.67 0.646493
Target:  5'- aGGCCGAcgccgcgggcacGGCGAUGacGUCuGCCGcgGCUCUa -3'
miRNA:   3'- gCCGGCU------------CCGCUAC--CAG-CGGC--UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 67463 0.7 0.457652
Target:  5'- gCGGCCagcucgugaaacccGAGGCcg-GGcCGCCG-CCCCg -3'
miRNA:   3'- -GCCGG--------------CUCCGcuaCCaGCGGCuGGGG- -5'
24423 3' -62.5 NC_005264.1 + 69755 0.7 0.443043
Target:  5'- gCGaGCUGAGaagcCGA-GGUCGCCGcgGCCCCu -3'
miRNA:   3'- -GC-CGGCUCc---GCUaCCAGCGGC--UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 69833 0.67 0.631118
Target:  5'- -cGCCGGGGUGAaGGcCGCCcugcuuggggcaucGCCCCu -3'
miRNA:   3'- gcCGGCUCCGCUaCCaGCGGc-------------UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 75435 0.67 0.635924
Target:  5'- gGGCCGugauucaGGGUGAU-GUUGauGGCCCCa -3'
miRNA:   3'- gCCGGC-------UCCGCUAcCAGCggCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 77739 0.67 0.636885
Target:  5'- uGcGCCGAGG-GAc--UCGCCGGCCaCCa -3'
miRNA:   3'- gC-CGGCUCCgCUaccAGCGGCUGG-GG- -5'
24423 3' -62.5 NC_005264.1 + 80500 0.71 0.381136
Target:  5'- aGGCCGAGagcgagaacaucgccGCGGUGcgcaacGUCGUCGcCCCCa -3'
miRNA:   3'- gCCGGCUC---------------CGCUAC------CAGCGGCuGGGG- -5'
24423 3' -62.5 NC_005264.1 + 80627 0.7 0.460256
Target:  5'- gGGCCccGAGGaCGAUGGaCGCgCGGCCa- -3'
miRNA:   3'- gCCGG--CUCC-GCUACCaGCG-GCUGGgg -5'
24423 3' -62.5 NC_005264.1 + 80749 0.73 0.31297
Target:  5'- aCGGCCaAGGCGGgaa-CGCuCGACCCCu -3'
miRNA:   3'- -GCCGGcUCCGCUaccaGCG-GCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 82954 0.66 0.675228
Target:  5'- -cGCCu--GCGAcGGUCGCCGccgcGCCCCc -3'
miRNA:   3'- gcCGGcucCGCUaCCAGCGGC----UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 84323 0.7 0.460256
Target:  5'- gGGCaCGGcGCGAUGGUUaCUGGCCUCa -3'
miRNA:   3'- gCCG-GCUcCGCUACCAGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 86324 0.69 0.486722
Target:  5'- -cGCCGAagcGGCGGUagacGGUCGCCuauuCCCCc -3'
miRNA:   3'- gcCGGCU---CCGCUA----CCAGCGGcu--GGGG- -5'
24423 3' -62.5 NC_005264.1 + 87444 0.66 0.684753
Target:  5'- gCGGCCGcgcAGaCGGUGGcgCGCaccaCGACUCCg -3'
miRNA:   3'- -GCCGGC---UCcGCUACCa-GCG----GCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 93079 0.69 0.486722
Target:  5'- gGGCCGcGGCGAccucGGcuucucagcUCGCCGACaUCCg -3'
miRNA:   3'- gCCGGCuCCGCUa---CC---------AGCGGCUG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.