Results 61 - 80 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24423 | 3' | -62.5 | NC_005264.1 | + | 93824 | 0.72 | 0.326665 |
Target: 5'- uGGCCGAGGUGgcGGUUcgguugGCCGugCgCg -3' miRNA: 3'- gCCGGCUCCGCuaCCAG------CGGCugGgG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 94277 | 0.68 | 0.569895 |
Target: 5'- uGGCCGcacUGAcuaUGGUCGCCGAguauuucgaCCCCg -3' miRNA: 3'- gCCGGCuccGCU---ACCAGCGGCU---------GGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 95358 | 0.67 | 0.636885 |
Target: 5'- uCGG-CGGGGCGgcGG-C-CCGGCCUCg -3' miRNA: 3'- -GCCgGCUCCGCuaCCaGcGGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 96279 | 0.68 | 0.54165 |
Target: 5'- aGGUgGcGGCGGagcuugUGGaaaUCGCCGACgCCCg -3' miRNA: 3'- gCCGgCuCCGCU------ACC---AGCGGCUG-GGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 98084 | 0.68 | 0.564214 |
Target: 5'- gCGGCCaaaucuaucaGGGCGAUccuugcgcggggcacGG-CGCCGAgCCCCa -3' miRNA: 3'- -GCCGGc---------UCCGCUA---------------CCaGCGGCU-GGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 99801 | 1.11 | 0.00071 |
Target: 5'- gCGGCCGAGGCGAUGGUCGCCGACCCCg -3' miRNA: 3'- -GCCGGCUCCGCUACCAGCGGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 108666 | 0.67 | 0.627274 |
Target: 5'- -cGCCGAGGCGA-GGUUGgCGguguGCgCCa -3' miRNA: 3'- gcCGGCUCCGCUaCCAGCgGC----UGgGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 108674 | 0.69 | 0.486722 |
Target: 5'- cCGGCCaGGGCGcgGuuuccgcaccGUCGauguagucggcaCCGACCCCg -3' miRNA: 3'- -GCCGGcUCCGCuaC----------CAGC------------GGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 109630 | 0.68 | 0.560434 |
Target: 5'- gGGCgGGGggcGCGAcGGUUGCaacucgCGGCCCCg -3' miRNA: 3'- gCCGgCUC---CGCUaCCAGCG------GCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 110588 | 0.66 | 0.69424 |
Target: 5'- uGGCCG-GGUGAguaGG-CGggGGCCCCg -3' miRNA: 3'- gCCGGCuCCGCUa--CCaGCggCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 116658 | 0.67 | 0.627274 |
Target: 5'- aGGuuGuagauGGCGGggcGGcCGCCGAUCCa -3' miRNA: 3'- gCCggCu----CCGCUa--CCaGCGGCUGGGg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 118221 | 0.69 | 0.513887 |
Target: 5'- uCGGCCGcGGUGAUGucCGCCaccaggaacaagGACCCUa -3' miRNA: 3'- -GCCGGCuCCGCUACcaGCGG------------CUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 121507 | 0.67 | 0.636885 |
Target: 5'- gCGGCUGcuucGaCGAUGGUCgGCgGGCCUCg -3' miRNA: 3'- -GCCGGCu---CcGCUACCAG-CGgCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 122116 | 0.71 | 0.40974 |
Target: 5'- gCGGCCGAggacccguucgGGCGAU--UC-CCGGCCCCc -3' miRNA: 3'- -GCCGGCU-----------CCGCUAccAGcGGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 122493 | 0.67 | 0.598487 |
Target: 5'- gGGUCucgGGGGCGAUGGgcUUGCCG-CCgCa -3' miRNA: 3'- gCCGG---CUCCGCUACC--AGCGGCuGGgG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 122789 | 0.67 | 0.608069 |
Target: 5'- -cGCCGGGGCGcugcgggcccuUGGUCGaCCG-CCgCCg -3' miRNA: 3'- gcCGGCUCCGCu----------ACCAGC-GGCuGG-GG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 123167 | 0.66 | 0.65609 |
Target: 5'- aCGGCCGcuugucGCGAUGcUUGCCG-CCCa -3' miRNA: 3'- -GCCGGCuc----CGCUACcAGCGGCuGGGg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 123493 | 0.7 | 0.434573 |
Target: 5'- uGGCCGcgcgguugcuGGGCGAUGuGcUCGCgGugUCCa -3' miRNA: 3'- gCCGGC----------UCCGCUAC-C-AGCGgCugGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 124165 | 0.67 | 0.646493 |
Target: 5'- gGGCaaCGuGGUGAUGGgCGCCG-CCgCg -3' miRNA: 3'- gCCG--GCuCCGCUACCaGCGGCuGGgG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 124304 | 0.69 | 0.477818 |
Target: 5'- gCGGCCGGacGGCGGggcGG-CgGCUGACCCg -3' miRNA: 3'- -GCCGGCU--CCGCUa--CCaG-CGGCUGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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