miRNA display CGI


Results 81 - 100 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24423 3' -62.5 NC_005264.1 + 125017 0.74 0.256751
Target:  5'- gGGCCaAGGgGA--GUCGUCGGCCCCg -3'
miRNA:   3'- gCCGGcUCCgCUacCAGCGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 125260 0.66 0.703682
Target:  5'- gCGGCCGccGCGAgacUUGCCGcCUCCg -3'
miRNA:   3'- -GCCGGCucCGCUaccAGCGGCuGGGG- -5'
24423 3' -62.5 NC_005264.1 + 130318 0.66 0.665671
Target:  5'- gGGCCGAGGaug-GGUCGCauCGugguCCUCu -3'
miRNA:   3'- gCCGGCUCCgcuaCCAGCG--GCu---GGGG- -5'
24423 3' -62.5 NC_005264.1 + 131227 0.7 0.434573
Target:  5'- uGGUCGcaGGGCGAUGcG-CGCCG-CCUCg -3'
miRNA:   3'- gCCGGC--UCCGCUAC-CaGCGGCuGGGG- -5'
24423 3' -62.5 NC_005264.1 + 131991 0.76 0.19045
Target:  5'- aGGCCGGuGGCGGUGGgcCGaCCGGCgCCa -3'
miRNA:   3'- gCCGGCU-CCGCUACCa-GC-GGCUGgGG- -5'
24423 3' -62.5 NC_005264.1 + 133958 0.67 0.636885
Target:  5'- uGGCCGGGGUcuucgcGGUGGcguUCGCCGcGCggUCCa -3'
miRNA:   3'- gCCGGCUCCG------CUACC---AGCGGC-UG--GGG- -5'
24423 3' -62.5 NC_005264.1 + 140042 0.67 0.617667
Target:  5'- aCGGUCccucugacaGGGGCGugagcaGuGUCGCCGcGCCCCu -3'
miRNA:   3'- -GCCGG---------CUCCGCua----C-CAGCGGC-UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 142601 0.67 0.627274
Target:  5'- cCGGCCGcGaCGAUGGccaCGCCGggcuACCUCg -3'
miRNA:   3'- -GCCGGCuCcGCUACCa--GCGGC----UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 144444 0.71 0.401661
Target:  5'- cCGGCCGGaaCGGUGGUCGuuGuCCgCCu -3'
miRNA:   3'- -GCCGGCUccGCUACCAGCggCuGG-GG- -5'
24423 3' -62.5 NC_005264.1 + 149246 0.68 0.569895
Target:  5'- uGGCCGGuguGGCGcUGGg-GCCGAagCCCu -3'
miRNA:   3'- gCCGGCU---CCGCuACCagCGGCUg-GGG- -5'
24423 3' -62.5 NC_005264.1 + 149456 0.68 0.560434
Target:  5'- gCGGCgGAGGaggucuCGggGGagcCGCgGGCCCCg -3'
miRNA:   3'- -GCCGgCUCC------GCuaCCa--GCGgCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 149947 0.69 0.475162
Target:  5'- aGGCCG-GGCGGcUcgacgguccguccgGGUCGUcaucggCGACCCCg -3'
miRNA:   3'- gCCGGCuCCGCU-A--------------CCAGCG------GCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 150808 0.68 0.588927
Target:  5'- gCGGgCGcuucgccuaaGGGCGgcGGUCGCCG-CCgCa -3'
miRNA:   3'- -GCCgGC----------UCCGCuaCCAGCGGCuGGgG- -5'
24423 3' -62.5 NC_005264.1 + 154807 0.69 0.499318
Target:  5'- aGGCgGAGggcGCGGUGGcgccgUCguggcgggcgccucuGCCGGCCCCg -3'
miRNA:   3'- gCCGgCUC---CGCUACC-----AG---------------CGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 155123 0.68 0.583203
Target:  5'- uGGCCaugcgcagcguuaggGAGGCGAuagugcuuuugUGGUCacuguuguuuGCCGACgCCg -3'
miRNA:   3'- gCCGG---------------CUCCGCU-----------ACCAG----------CGGCUGgGG- -5'
24423 3' -62.5 NC_005264.1 + 156150 0.67 0.608069
Target:  5'- aGGgCGAGGCGGccGUC-UCGGCCUCg -3'
miRNA:   3'- gCCgGCUCCGCUacCAGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 156429 0.71 0.41792
Target:  5'- gCGGCUGGcGGCGGUGaUCGCCucgauAUCCCa -3'
miRNA:   3'- -GCCGGCU-CCGCUACcAGCGGc----UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 156453 0.71 0.400859
Target:  5'- uGGCCGuGgagcagcacgaGCGGcUGGUCGCCGaguucaugcugcaGCCCCu -3'
miRNA:   3'- gCCGGCuC-----------CGCU-ACCAGCGGC-------------UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 156624 0.68 0.57369
Target:  5'- gCGGCCGcGGCGggGGgucaaaggacgcgucUCGCaCGGCCa- -3'
miRNA:   3'- -GCCGGCuCCGCuaCC---------------AGCG-GCUGGgg -5'
24423 3' -62.5 NC_005264.1 + 157232 0.68 0.579394
Target:  5'- gCGGcCCGAuagcGGCuccGGUCGCCGAUCUg -3'
miRNA:   3'- -GCC-GGCU----CCGcuaCCAGCGGCUGGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.