miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24423 3' -62.5 NC_005264.1 + 125260 0.66 0.703682
Target:  5'- gCGGCCGccGCGAgacUUGCCGcCUCCg -3'
miRNA:   3'- -GCCGGCucCGCUaccAGCGGCuGGGG- -5'
24423 3' -62.5 NC_005264.1 + 125017 0.74 0.256751
Target:  5'- gGGCCaAGGgGA--GUCGUCGGCCCCg -3'
miRNA:   3'- gCCGGcUCCgCUacCAGCGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 124304 0.69 0.477818
Target:  5'- gCGGCCGGacGGCGGggcGG-CgGCUGACCCg -3'
miRNA:   3'- -GCCGGCU--CCGCUa--CCaG-CGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 124165 0.67 0.646493
Target:  5'- gGGCaaCGuGGUGAUGGgCGCCG-CCgCg -3'
miRNA:   3'- gCCG--GCuCCGCUACCaGCGGCuGGgG- -5'
24423 3' -62.5 NC_005264.1 + 123493 0.7 0.434573
Target:  5'- uGGCCGcgcgguugcuGGGCGAUGuGcUCGCgGugUCCa -3'
miRNA:   3'- gCCGGC----------UCCGCUAC-C-AGCGgCugGGG- -5'
24423 3' -62.5 NC_005264.1 + 123167 0.66 0.65609
Target:  5'- aCGGCCGcuugucGCGAUGcUUGCCG-CCCa -3'
miRNA:   3'- -GCCGGCuc----CGCUACcAGCGGCuGGGg -5'
24423 3' -62.5 NC_005264.1 + 122789 0.67 0.608069
Target:  5'- -cGCCGGGGCGcugcgggcccuUGGUCGaCCG-CCgCCg -3'
miRNA:   3'- gcCGGCUCCGCu----------ACCAGC-GGCuGG-GG- -5'
24423 3' -62.5 NC_005264.1 + 122493 0.67 0.598487
Target:  5'- gGGUCucgGGGGCGAUGGgcUUGCCG-CCgCa -3'
miRNA:   3'- gCCGG---CUCCGCUACC--AGCGGCuGGgG- -5'
24423 3' -62.5 NC_005264.1 + 122116 0.71 0.40974
Target:  5'- gCGGCCGAggacccguucgGGCGAU--UC-CCGGCCCCc -3'
miRNA:   3'- -GCCGGCU-----------CCGCUAccAGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 121507 0.67 0.636885
Target:  5'- gCGGCUGcuucGaCGAUGGUCgGCgGGCCUCg -3'
miRNA:   3'- -GCCGGCu---CcGCUACCAG-CGgCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 118221 0.69 0.513887
Target:  5'- uCGGCCGcGGUGAUGucCGCCaccaggaacaagGACCCUa -3'
miRNA:   3'- -GCCGGCuCCGCUACcaGCGG------------CUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 116658 0.67 0.627274
Target:  5'- aGGuuGuagauGGCGGggcGGcCGCCGAUCCa -3'
miRNA:   3'- gCCggCu----CCGCUa--CCaGCGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 110588 0.66 0.69424
Target:  5'- uGGCCG-GGUGAguaGG-CGggGGCCCCg -3'
miRNA:   3'- gCCGGCuCCGCUa--CCaGCggCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 109630 0.68 0.560434
Target:  5'- gGGCgGGGggcGCGAcGGUUGCaacucgCGGCCCCg -3'
miRNA:   3'- gCCGgCUC---CGCUaCCAGCG------GCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 108674 0.69 0.486722
Target:  5'- cCGGCCaGGGCGcgGuuuccgcaccGUCGauguagucggcaCCGACCCCg -3'
miRNA:   3'- -GCCGGcUCCGCuaC----------CAGC------------GGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 108666 0.67 0.627274
Target:  5'- -cGCCGAGGCGA-GGUUGgCGguguGCgCCa -3'
miRNA:   3'- gcCGGCUCCGCUaCCAGCgGC----UGgGG- -5'
24423 3' -62.5 NC_005264.1 + 99801 1.11 0.00071
Target:  5'- gCGGCCGAGGCGAUGGUCGCCGACCCCg -3'
miRNA:   3'- -GCCGGCUCCGCUACCAGCGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 98084 0.68 0.564214
Target:  5'- gCGGCCaaaucuaucaGGGCGAUccuugcgcggggcacGG-CGCCGAgCCCCa -3'
miRNA:   3'- -GCCGGc---------UCCGCUA---------------CCaGCGGCU-GGGG- -5'
24423 3' -62.5 NC_005264.1 + 96279 0.68 0.54165
Target:  5'- aGGUgGcGGCGGagcuugUGGaaaUCGCCGACgCCCg -3'
miRNA:   3'- gCCGgCuCCGCU------ACC---AGCGGCUG-GGG- -5'
24423 3' -62.5 NC_005264.1 + 95358 0.67 0.636885
Target:  5'- uCGG-CGGGGCGgcGG-C-CCGGCCUCg -3'
miRNA:   3'- -GCCgGCUCCGCuaCCaGcGGCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.