Results 61 - 80 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24423 | 3' | -62.5 | NC_005264.1 | + | 53211 | 0.66 | 0.665671 |
Target: 5'- uGGCCGAGGUaGUGGaCGCguauCUCCg -3' miRNA: 3'- gCCGGCUCCGcUACCaGCGgcu-GGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 52691 | 0.67 | 0.646493 |
Target: 5'- -aGCCGcGGCGGguuUCGCCGcccGCCCCc -3' miRNA: 3'- gcCGGCuCCGCUaccAGCGGC---UGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 52128 | 0.68 | 0.560434 |
Target: 5'- aGGCCuccGGUGAUGGagaCGCUggagauuauaGACCCCa -3' miRNA: 3'- gCCGGcu-CCGCUACCa--GCGG----------CUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 49377 | 0.71 | 0.41792 |
Target: 5'- uGGCaCGAccGCGG-GGUCGguCCGACCCCg -3' miRNA: 3'- gCCG-GCUc-CGCUaCCAGC--GGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 48621 | 0.73 | 0.299715 |
Target: 5'- aGGCCGGGGaGGUGGgcaaGCCGGCgUCg -3' miRNA: 3'- gCCGGCUCCgCUACCag--CGGCUGgGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 47952 | 0.7 | 0.443043 |
Target: 5'- uCGGCaCGAGcGUGGggaaGGUgGCCGAUCCg -3' miRNA: 3'- -GCCG-GCUC-CGCUa---CCAgCGGCUGGGg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 46256 | 0.68 | 0.532336 |
Target: 5'- cCGcGCCugGGGGCGuuuaggGGUCGCCGAgCUg -3' miRNA: 3'- -GC-CGG--CUCCGCua----CCAGCGGCUgGGg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 44774 | 0.7 | 0.468995 |
Target: 5'- aGGugcCCGcGGCGAUcGUUGCCGACgCCg -3' miRNA: 3'- gCC---GGCuCCGCUAcCAGCGGCUGgGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 42257 | 0.68 | 0.532336 |
Target: 5'- cCGGCCGGGGCccgccuauugccGGcgcGGUcaaCGCCGcgggGCCCCa -3' miRNA: 3'- -GCCGGCUCCG------------CUa--CCA---GCGGC----UGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 40791 | 0.68 | 0.561379 |
Target: 5'- gGcGCCGAGaGCGGagccgcuugccgcggGGUCGCCGAgacucaagaUCCCg -3' miRNA: 3'- gC-CGGCUC-CGCUa--------------CCAGCGGCU---------GGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 40641 | 0.66 | 0.65609 |
Target: 5'- cCGcGCCGucGCGAcgcggagGGUCGCCGuuucgguuGCCgCCa -3' miRNA: 3'- -GC-CGGCucCGCUa------CCAGCGGC--------UGG-GG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 39053 | 0.68 | 0.560434 |
Target: 5'- uGGCCGAguucgcgcGGCGGUccacccccGGaCGCCGGCUCg -3' miRNA: 3'- gCCGGCU--------CCGCUA--------CCaGCGGCUGGGg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 38205 | 0.68 | 0.579394 |
Target: 5'- gCGGcCCGAuagcGGCuccGGUCGCCGAUCUg -3' miRNA: 3'- -GCC-GGCU----CCGcuaCCAGCGGCUGGGg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 37597 | 0.68 | 0.57369 |
Target: 5'- gCGGCCGcGGCGggGGgucaaaggacgcgucUCGCaCGGCCa- -3' miRNA: 3'- -GCCGGCuCCGCuaCC---------------AGCG-GCUGGgg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 37426 | 0.71 | 0.400859 |
Target: 5'- uGGCCGuGgagcagcacgaGCGGcUGGUCGCCGaguucaugcugcaGCCCCu -3' miRNA: 3'- gCCGGCuC-----------CGCU-ACCAGCGGC-------------UGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 37123 | 0.67 | 0.608069 |
Target: 5'- aGGgCGAGGCGGccGUC-UCGGCCUCg -3' miRNA: 3'- gCCgGCUCCGCUacCAGcGGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 36099 | 0.69 | 0.513887 |
Target: 5'- uCGGCgCGGcuGGCaGAUGGguacUCGCCGGCCg- -3' miRNA: 3'- -GCCG-GCU--CCG-CUACC----AGCGGCUGGgg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 35897 | 0.69 | 0.52308 |
Target: 5'- uGGgCGuGGUGucggGGUCGCUGGCUCUc -3' miRNA: 3'- gCCgGCuCCGCua--CCAGCGGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 35781 | 0.69 | 0.499318 |
Target: 5'- aGGCgGAGggcGCGGUGGcgccgUCguggcgggcgccucuGCCGGCCCCg -3' miRNA: 3'- gCCGgCUC---CGCUACC-----AG---------------CGGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 33626 | 0.71 | 0.40974 |
Target: 5'- uCGGCCaGAuuggcGGCGAcgguUGGUCgacggugcuaGCCGACCCa -3' miRNA: 3'- -GCCGG-CU-----CCGCU----ACCAG----------CGGCUGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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