miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24423 3' -62.5 NC_005264.1 + 161284 0.68 0.532336
Target:  5'- cCGGCCGGGGCccgccuauugccGGcgcGGUcaaCGCCGcgggGCCCCa -3'
miRNA:   3'- -GCCGGCUCCG------------CUa--CCA---GCGGC----UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 149947 0.69 0.475162
Target:  5'- aGGCCG-GGCGGcUcgacgguccguccgGGUCGUcaucggCGACCCCg -3'
miRNA:   3'- gCCGGCuCCGCU-A--------------CCAGCG------GCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 124304 0.69 0.477818
Target:  5'- gCGGCCGGacGGCGGggcGG-CgGCUGACCCg -3'
miRNA:   3'- -GCCGGCU--CCGCUa--CCaG-CGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 93079 0.69 0.486722
Target:  5'- gGGCCGcGGCGAccucGGcuucucagcUCGCCGACaUCCg -3'
miRNA:   3'- gCCGGCuCCGCUa---CC---------AGCGGCUG-GGG- -5'
24423 3' -62.5 NC_005264.1 + 86324 0.69 0.486722
Target:  5'- -cGCCGAagcGGCGGUagacGGUCGCCuauuCCCCc -3'
miRNA:   3'- gcCGGCU---CCGCUA----CCAGCGGcu--GGGG- -5'
24423 3' -62.5 NC_005264.1 + 108674 0.69 0.486722
Target:  5'- cCGGCCaGGGCGcgGuuuccgcaccGUCGauguagucggcaCCGACCCCg -3'
miRNA:   3'- -GCCGGcUCCGCuaC----------CAGC------------GGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 154807 0.69 0.499318
Target:  5'- aGGCgGAGggcGCGGUGGcgccgUCguggcgggcgccucuGCCGGCCCCg -3'
miRNA:   3'- gCCGgCUC---CGCUACC-----AG---------------CGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 36099 0.69 0.513887
Target:  5'- uCGGCgCGGcuGGCaGAUGGguacUCGCCGGCCg- -3'
miRNA:   3'- -GCCG-GCU--CCG-CUACC----AGCGGCUGGgg -5'
24423 3' -62.5 NC_005264.1 + 35897 0.69 0.52308
Target:  5'- uGGgCGuGGUGucggGGUCGCUGGCUCUc -3'
miRNA:   3'- gCCgGCuCCGCua--CCAGCGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 84323 0.7 0.460256
Target:  5'- gGGCaCGGcGCGAUGGUUaCUGGCCUCa -3'
miRNA:   3'- gCCG-GCUcCGCUACCAGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 67463 0.7 0.457652
Target:  5'- gCGGCCagcucgugaaacccGAGGCcg-GGcCGCCG-CCCCg -3'
miRNA:   3'- -GCCGG--------------CUCCGcuaCCaGCGGCuGGGG- -5'
24423 3' -62.5 NC_005264.1 + 47952 0.7 0.443043
Target:  5'- uCGGCaCGAGcGUGGggaaGGUgGCCGAUCCg -3'
miRNA:   3'- -GCCG-GCUC-CGCUa---CCAgCGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 80749 0.73 0.31297
Target:  5'- aCGGCCaAGGCGGgaa-CGCuCGACCCCu -3'
miRNA:   3'- -GCCGGcUCCGCUaccaGCG-GCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 27507 0.72 0.362821
Target:  5'- aGGCgcaGuGGCGGgcugGGUCGCCGuaACCCUc -3'
miRNA:   3'- gCCGg--CuCCGCUa---CCAGCGGC--UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 60541 0.72 0.370377
Target:  5'- cCGGCCGAGGUGucgucgagGGUCGuCCuGACgUCCu -3'
miRNA:   3'- -GCCGGCUCCGCua------CCAGC-GG-CUG-GGG- -5'
24423 3' -62.5 NC_005264.1 + 156453 0.71 0.400859
Target:  5'- uGGCCGuGgagcagcacgaGCGGcUGGUCGCCGaguucaugcugcaGCCCCu -3'
miRNA:   3'- gCCGGCuC-----------CGCU-ACCAGCGGC-------------UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 33626 0.71 0.40974
Target:  5'- uCGGCCaGAuuggcGGCGAcgguUGGUCgacggugcuaGCCGACCCa -3'
miRNA:   3'- -GCCGG-CU-----CCGCU----ACCAG----------CGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 122116 0.71 0.40974
Target:  5'- gCGGCCGAggacccguucgGGCGAU--UC-CCGGCCCCc -3'
miRNA:   3'- -GCCGGCU-----------CCGCUAccAGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 131227 0.7 0.434573
Target:  5'- uGGUCGcaGGGCGAUGcG-CGCCG-CCUCg -3'
miRNA:   3'- gCCGGC--UCCGCUAC-CaGCGGCuGGGG- -5'
24423 3' -62.5 NC_005264.1 + 16572 0.7 0.443043
Target:  5'- gGcGCCGGGGCGgcGG-CGCacauGACUCCg -3'
miRNA:   3'- gC-CGGCUCCGCuaCCaGCGg---CUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.