miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24423 3' -62.5 NC_005264.1 + 154807 0.69 0.499318
Target:  5'- aGGCgGAGggcGCGGUGGcgccgUCguggcgggcgccucuGCCGGCCCCg -3'
miRNA:   3'- gCCGgCUC---CGCUACC-----AG---------------CGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 108674 0.69 0.486722
Target:  5'- cCGGCCaGGGCGcgGuuuccgcaccGUCGauguagucggcaCCGACCCCg -3'
miRNA:   3'- -GCCGGcUCCGCuaC----------CAGC------------GGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 86324 0.69 0.486722
Target:  5'- -cGCCGAagcGGCGGUagacGGUCGCCuauuCCCCc -3'
miRNA:   3'- gcCGGCU---CCGCUA----CCAGCGGcu--GGGG- -5'
24423 3' -62.5 NC_005264.1 + 93079 0.69 0.486722
Target:  5'- gGGCCGcGGCGAccucGGcuucucagcUCGCCGACaUCCg -3'
miRNA:   3'- gCCGGCuCCGCUa---CC---------AGCGGCUG-GGG- -5'
24423 3' -62.5 NC_005264.1 + 124304 0.69 0.477818
Target:  5'- gCGGCCGGacGGCGGggcGG-CgGCUGACCCg -3'
miRNA:   3'- -GCCGGCU--CCGCUa--CCaG-CGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 149947 0.69 0.475162
Target:  5'- aGGCCG-GGCGGcUcgacgguccguccgGGUCGUcaucggCGACCCCg -3'
miRNA:   3'- gCCGGCuCCGCU-A--------------CCAGCG------GCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 95358 0.67 0.636885
Target:  5'- uCGG-CGGGGCGgcGG-C-CCGGCCUCg -3'
miRNA:   3'- -GCCgGCUCCGCuaCCaGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 77739 0.67 0.636885
Target:  5'- uGcGCCGAGG-GAc--UCGCCGGCCaCCa -3'
miRNA:   3'- gC-CGGCUCCgCUaccAGCGGCUGG-GG- -5'
24423 3' -62.5 NC_005264.1 + 2480 0.67 0.636885
Target:  5'- gCGGCUGcuucGaCGAUGGUCgGCgGGCCUCg -3'
miRNA:   3'- -GCCGGCu---CcGCUACCAG-CGgCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 133958 0.67 0.636885
Target:  5'- uGGCCGGGGUcuucgcGGUGGcguUCGCCGcGCggUCCa -3'
miRNA:   3'- gCCGGCUCCG------CUACC---AGCGGC-UG--GGG- -5'
24423 3' -62.5 NC_005264.1 + 75435 0.67 0.635924
Target:  5'- gGGCCGugauucaGGGUGAU-GUUGauGGCCCCa -3'
miRNA:   3'- gCCGGC-------UCCGCUAcCAGCggCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 108666 0.67 0.627274
Target:  5'- -cGCCGAGGCGA-GGUUGgCGguguGCgCCa -3'
miRNA:   3'- gcCGGCUCCGCUaCCAGCgGC----UGgGG- -5'
24423 3' -62.5 NC_005264.1 + 124165 0.67 0.646493
Target:  5'- gGGCaaCGuGGUGAUGGgCGCCG-CCgCg -3'
miRNA:   3'- gCCG--GCuCCGCUACCaGCGGCuGGgG- -5'
24423 3' -62.5 NC_005264.1 + 4140 0.66 0.65609
Target:  5'- aCGGCCGcuugucGCGAUGcUUGCCG-CCCa -3'
miRNA:   3'- -GCCGGCuc----CGCUACcAGCGGCuGGGg -5'
24423 3' -62.5 NC_005264.1 + 40641 0.66 0.65609
Target:  5'- cCGcGCCGucGCGAcgcggagGGUCGCCGuuucgguuGCCgCCa -3'
miRNA:   3'- -GC-CGGCucCGCUa------CCAGCGGC--------UGG-GG- -5'
24423 3' -62.5 NC_005264.1 + 130318 0.66 0.665671
Target:  5'- gGGCCGAGGaug-GGUCGCauCGugguCCUCu -3'
miRNA:   3'- gCCGGCUCCgcuaCCAGCG--GCu---GGGG- -5'
24423 3' -62.5 NC_005264.1 + 53211 0.66 0.665671
Target:  5'- uGGCCGAGGUaGUGGaCGCguauCUCCg -3'
miRNA:   3'- gCCGGCUCCGcUACCaGCGgcu-GGGG- -5'
24423 3' -62.5 NC_005264.1 + 21451 0.66 0.69424
Target:  5'- uGGUCGGGGCucgcGAUGGUgucgaCGUgGAUUCCu -3'
miRNA:   3'- gCCGGCUCCG----CUACCA-----GCGgCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 56532 0.66 0.69424
Target:  5'- cCGGCgGcacAGGUGAUGGU-GCCGGCg-- -3'
miRNA:   3'- -GCCGgC---UCCGCUACCAgCGGCUGggg -5'
24423 3' -62.5 NC_005264.1 + 99801 1.11 0.00071
Target:  5'- gCGGCCGAGGCGAUGGUCGCCGACCCCg -3'
miRNA:   3'- -GCCGGCUCCGCUACCAGCGGCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.