Results 61 - 80 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24423 | 3' | -62.5 | NC_005264.1 | + | 46256 | 0.68 | 0.532336 |
Target: 5'- cCGcGCCugGGGGCGuuuaggGGUCGCCGAgCUg -3' miRNA: 3'- -GC-CGG--CUCCGCua----CCAGCGGCUgGGg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 42257 | 0.68 | 0.532336 |
Target: 5'- cCGGCCGGGGCccgccuauugccGGcgcGGUcaaCGCCGcgggGCCCCa -3' miRNA: 3'- -GCCGGCUCCG------------CUa--CCA---GCGGC----UGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 3763 | 0.67 | 0.608069 |
Target: 5'- -cGCCGGGGCGcugcgggcccuUGGUCGaCCG-CCgCCg -3' miRNA: 3'- gcCGGCUCCGCu----------ACCAGC-GGCuGG-GG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 27626 | 0.67 | 0.608069 |
Target: 5'- uGGCU-AGGCGGcUGGUCGCgCGAaCUCg -3' miRNA: 3'- gCCGGcUCCGCU-ACCAGCG-GCUgGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 140042 | 0.67 | 0.617667 |
Target: 5'- aCGGUCccucugacaGGGGCGugagcaGuGUCGCCGcGCCCCu -3' miRNA: 3'- -GCCGG---------CUCCGCua----C-CAGCGGC-UGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 56532 | 0.66 | 0.69424 |
Target: 5'- cCGGCgGcacAGGUGAUGGU-GCCGGCg-- -3' miRNA: 3'- -GCCGgC---UCCGCUACCAgCGGCUGggg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 21451 | 0.66 | 0.69424 |
Target: 5'- uGGUCGGGGCucgcGAUGGUgucgaCGUgGAUUCCu -3' miRNA: 3'- gCCGGCUCCG----CUACCA-----GCGgCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 53211 | 0.66 | 0.665671 |
Target: 5'- uGGCCGAGGUaGUGGaCGCguauCUCCg -3' miRNA: 3'- gCCGGCUCCGcUACCaGCGgcu-GGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 130318 | 0.66 | 0.665671 |
Target: 5'- gGGCCGAGGaug-GGUCGCauCGugguCCUCu -3' miRNA: 3'- gCCGGCUCCgcuaCCAGCG--GCu---GGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 40641 | 0.66 | 0.65609 |
Target: 5'- cCGcGCCGucGCGAcgcggagGGUCGCCGuuucgguuGCCgCCa -3' miRNA: 3'- -GC-CGGCucCGCUa------CCAGCGGC--------UGG-GG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 4140 | 0.66 | 0.65609 |
Target: 5'- aCGGCCGcuugucGCGAUGcUUGCCG-CCCa -3' miRNA: 3'- -GCCGGCuc----CGCUACcAGCGGCuGGGg -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 124165 | 0.67 | 0.646493 |
Target: 5'- gGGCaaCGuGGUGAUGGgCGCCG-CCgCg -3' miRNA: 3'- gCCG--GCuCCGCUACCaGCGGCuGGgG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 95358 | 0.67 | 0.636885 |
Target: 5'- uCGG-CGGGGCGgcGG-C-CCGGCCUCg -3' miRNA: 3'- -GCCgGCUCCGCuaCCaGcGGCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 77739 | 0.67 | 0.636885 |
Target: 5'- uGcGCCGAGG-GAc--UCGCCGGCCaCCa -3' miRNA: 3'- gC-CGGCUCCgCUaccAGCGGCUGG-GG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 2480 | 0.67 | 0.636885 |
Target: 5'- gCGGCUGcuucGaCGAUGGUCgGCgGGCCUCg -3' miRNA: 3'- -GCCGGCu---CcGCUACCAG-CGgCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 133958 | 0.67 | 0.636885 |
Target: 5'- uGGCCGGGGUcuucgcGGUGGcguUCGCCGcGCggUCCa -3' miRNA: 3'- gCCGGCUCCG------CUACC---AGCGGC-UG--GGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 75435 | 0.67 | 0.635924 |
Target: 5'- gGGCCGugauucaGGGUGAU-GUUGauGGCCCCa -3' miRNA: 3'- gCCGGC-------UCCGCUAcCAGCggCUGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 108666 | 0.67 | 0.627274 |
Target: 5'- -cGCCGAGGCGA-GGUUGgCGguguGCgCCa -3' miRNA: 3'- gcCGGCUCCGCUaCCAGCgGC----UGgGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 25621 | 0.67 | 0.627274 |
Target: 5'- gCGGaacaCGGcGGCGGUGGg-GCCGcGCUCCg -3' miRNA: 3'- -GCCg---GCU-CCGCUACCagCGGC-UGGGG- -5' |
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24423 | 3' | -62.5 | NC_005264.1 | + | 116658 | 0.67 | 0.627274 |
Target: 5'- aGGuuGuagauGGCGGggcGGcCGCCGAUCCa -3' miRNA: 3'- gCCggCu----CCGCUa--CCaGCGGCUGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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