miRNA display CGI


Results 81 - 100 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24423 3' -62.5 NC_005264.1 + 4140 0.66 0.65609
Target:  5'- aCGGCCGcuugucGCGAUGcUUGCCG-CCCa -3'
miRNA:   3'- -GCCGGCuc----CGCUACcAGCGGCuGGGg -5'
24423 3' -62.5 NC_005264.1 + 40641 0.66 0.65609
Target:  5'- cCGcGCCGucGCGAcgcggagGGUCGCCGuuucgguuGCCgCCa -3'
miRNA:   3'- -GC-CGGCucCGCUa------CCAGCGGC--------UGG-GG- -5'
24423 3' -62.5 NC_005264.1 + 130318 0.66 0.665671
Target:  5'- gGGCCGAGGaug-GGUCGCauCGugguCCUCu -3'
miRNA:   3'- gCCGGCUCCgcuaCCAGCG--GCu---GGGG- -5'
24423 3' -62.5 NC_005264.1 + 53211 0.66 0.665671
Target:  5'- uGGCCGAGGUaGUGGaCGCguauCUCCg -3'
miRNA:   3'- gCCGGCUCCGcUACCaGCGgcu-GGGG- -5'
24423 3' -62.5 NC_005264.1 + 21451 0.66 0.69424
Target:  5'- uGGUCGGGGCucgcGAUGGUgucgaCGUgGAUUCCu -3'
miRNA:   3'- gCCGGCUCCG----CUACCA-----GCGgCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 56532 0.66 0.69424
Target:  5'- cCGGCgGcacAGGUGAUGGU-GCCGGCg-- -3'
miRNA:   3'- -GCCGgC---UCCGCUACCAgCGGCUGggg -5'
24423 3' -62.5 NC_005264.1 + 75435 0.67 0.635924
Target:  5'- gGGCCGugauucaGGGUGAU-GUUGauGGCCCCa -3'
miRNA:   3'- gCCGGC-------UCCGCUAcCAGCggCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 108666 0.67 0.627274
Target:  5'- -cGCCGAGGCGA-GGUUGgCGguguGCgCCa -3'
miRNA:   3'- gcCGGCUCCGCUaCCAGCgGC----UGgGG- -5'
24423 3' -62.5 NC_005264.1 + 25621 0.67 0.627274
Target:  5'- gCGGaacaCGGcGGCGGUGGg-GCCGcGCUCCg -3'
miRNA:   3'- -GCCg---GCU-CCGCUACCagCGGC-UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 149246 0.68 0.569895
Target:  5'- uGGCCGGuguGGCGcUGGg-GCCGAagCCCu -3'
miRNA:   3'- gCCGGCU---CCGCuACCagCGGCUg-GGG- -5'
24423 3' -62.5 NC_005264.1 + 37597 0.68 0.57369
Target:  5'- gCGGCCGcGGCGggGGgucaaaggacgcgucUCGCaCGGCCa- -3'
miRNA:   3'- -GCCGGCuCCGCuaCC---------------AGCG-GCUGGgg -5'
24423 3' -62.5 NC_005264.1 + 38205 0.68 0.579394
Target:  5'- gCGGcCCGAuagcGGCuccGGUCGCCGAUCUg -3'
miRNA:   3'- -GCC-GGCU----CCGcuaCCAGCGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 155123 0.68 0.583203
Target:  5'- uGGCCaugcgcagcguuaggGAGGCGAuagugcuuuugUGGUCacuguuguuuGCCGACgCCg -3'
miRNA:   3'- gCCGG---------------CUCCGCU-----------ACCAG----------CGGCUGgGG- -5'
24423 3' -62.5 NC_005264.1 + 31782 0.68 0.588927
Target:  5'- gCGGgCGcuucgccuaaGGGCGgcGGUCGCCG-CCgCa -3'
miRNA:   3'- -GCCgGC----------UCCGCuaCCAGCGGCuGGgG- -5'
24423 3' -62.5 NC_005264.1 + 3466 0.67 0.598487
Target:  5'- gGGUCucgGGGGCGAUGGgcUUGCCG-CCgCa -3'
miRNA:   3'- gCCGG---CUCCGCUACC--AGCGGCuGGgG- -5'
24423 3' -62.5 NC_005264.1 + 37123 0.67 0.608069
Target:  5'- aGGgCGAGGCGGccGUC-UCGGCCUCg -3'
miRNA:   3'- gCCgGCUCCGCUacCAGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 3763 0.67 0.608069
Target:  5'- -cGCCGGGGCGcugcgggcccuUGGUCGaCCG-CCgCCg -3'
miRNA:   3'- gcCGGCUCCGCu----------ACCAGC-GGCuGG-GG- -5'
24423 3' -62.5 NC_005264.1 + 27626 0.67 0.608069
Target:  5'- uGGCU-AGGCGGcUGGUCGCgCGAaCUCg -3'
miRNA:   3'- gCCGGcUCCGCU-ACCAGCG-GCUgGGG- -5'
24423 3' -62.5 NC_005264.1 + 140042 0.67 0.617667
Target:  5'- aCGGUCccucugacaGGGGCGugagcaGuGUCGCCGcGCCCCu -3'
miRNA:   3'- -GCCGG---------CUCCGCua----C-CAGCGGC-UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 116658 0.67 0.627274
Target:  5'- aGGuuGuagauGGCGGggcGGcCGCCGAUCCa -3'
miRNA:   3'- gCCggCu----CCGCUa--CCaGCGGCUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.