miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24423 3' -62.5 NC_005264.1 + 155123 0.68 0.583203
Target:  5'- uGGCCaugcgcagcguuaggGAGGCGAuagugcuuuugUGGUCacuguuguuuGCCGACgCCg -3'
miRNA:   3'- gCCGG---------------CUCCGCU-----------ACCAG----------CGGCUGgGG- -5'
24423 3' -62.5 NC_005264.1 + 37123 0.67 0.608069
Target:  5'- aGGgCGAGGCGGccGUC-UCGGCCUCg -3'
miRNA:   3'- gCCgGCUCCGCUacCAGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 2480 0.67 0.636885
Target:  5'- gCGGCUGcuucGaCGAUGGUCgGCgGGCCUCg -3'
miRNA:   3'- -GCCGGCu---CcGCUACCAG-CGgCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 53211 0.66 0.665671
Target:  5'- uGGCCGAGGUaGUGGaCGCguauCUCCg -3'
miRNA:   3'- gCCGGCUCCGcUACCaGCGgcu-GGGG- -5'
24423 3' -62.5 NC_005264.1 + 42257 0.68 0.532336
Target:  5'- cCGGCCGGGGCccgccuauugccGGcgcGGUcaaCGCCGcgggGCCCCa -3'
miRNA:   3'- -GCCGGCUCCG------------CUa--CCA---GCGGC----UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 98084 0.68 0.564214
Target:  5'- gCGGCCaaaucuaucaGGGCGAUccuugcgcggggcacGG-CGCCGAgCCCCa -3'
miRNA:   3'- -GCCGGc---------UCCGCUA---------------CCaGCGGCU-GGGG- -5'
24423 3' -62.5 NC_005264.1 + 27626 0.67 0.608069
Target:  5'- uGGCU-AGGCGGcUGGUCGCgCGAaCUCg -3'
miRNA:   3'- gCCGGcUCCGCU-ACCAGCG-GCUgGGG- -5'
24423 3' -62.5 NC_005264.1 + 21451 0.66 0.69424
Target:  5'- uGGUCGGGGCucgcGAUGGUgucgaCGUgGAUUCCu -3'
miRNA:   3'- gCCGGCUCCG----CUACCA-----GCGgCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 94277 0.68 0.569895
Target:  5'- uGGCCGcacUGAcuaUGGUCGCCGAguauuucgaCCCCg -3'
miRNA:   3'- gCCGGCuccGCU---ACCAGCGGCU---------GGGG- -5'
24423 3' -62.5 NC_005264.1 + 56532 0.66 0.69424
Target:  5'- cCGGCgGcacAGGUGAUGGU-GCCGGCg-- -3'
miRNA:   3'- -GCCGgC---UCCGCUACCAgCGGCUGggg -5'
24423 3' -62.5 NC_005264.1 + 3763 0.67 0.608069
Target:  5'- -cGCCGGGGCGcugcgggcccuUGGUCGaCCG-CCgCCg -3'
miRNA:   3'- gcCGGCUCCGCu----------ACCAGC-GGCuGG-GG- -5'
24423 3' -62.5 NC_005264.1 + 38205 0.68 0.579394
Target:  5'- gCGGcCCGAuagcGGCuccGGUCGCCGAUCUg -3'
miRNA:   3'- -GCC-GGCU----CCGcuaCCAGCGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 25621 0.67 0.627274
Target:  5'- gCGGaacaCGGcGGCGGUGGg-GCCGcGCUCCg -3'
miRNA:   3'- -GCCg---GCU-CCGCUACCagCGGC-UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 133958 0.67 0.636885
Target:  5'- uGGCCGGGGUcuucgcGGUGGcguUCGCCGcGCggUCCa -3'
miRNA:   3'- gCCGGCUCCG------CUACC---AGCGGC-UG--GGG- -5'
24423 3' -62.5 NC_005264.1 + 124165 0.67 0.646493
Target:  5'- gGGCaaCGuGGUGAUGGgCGCCG-CCgCg -3'
miRNA:   3'- gCCG--GCuCCGCUACCaGCGGCuGGgG- -5'
24423 3' -62.5 NC_005264.1 + 130318 0.66 0.665671
Target:  5'- gGGCCGAGGaug-GGUCGCauCGugguCCUCu -3'
miRNA:   3'- gCCGGCUCCgcuaCCAGCG--GCu---GGGG- -5'
24423 3' -62.5 NC_005264.1 + 44774 0.7 0.468995
Target:  5'- aGGugcCCGcGGCGAUcGUUGCCGACgCCg -3'
miRNA:   3'- gCC---GGCuCCGCUAcCAGCGGCUGgGG- -5'
24423 3' -62.5 NC_005264.1 + 118221 0.69 0.513887
Target:  5'- uCGGCCGcGGUGAUGucCGCCaccaggaacaagGACCCUa -3'
miRNA:   3'- -GCCGGCuCCGCUACcaGCGG------------CUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 109630 0.68 0.560434
Target:  5'- gGGCgGGGggcGCGAcGGUUGCaacucgCGGCCCCg -3'
miRNA:   3'- gCCGgCUC---CGCUaCCAGCG------GCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 52128 0.68 0.560434
Target:  5'- aGGCCuccGGUGAUGGagaCGCUggagauuauaGACCCCa -3'
miRNA:   3'- gCCGGcu-CCGCUACCa--GCGG----------CUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.