miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24423 3' -62.5 NC_005264.1 + 96279 0.68 0.54165
Target:  5'- aGGUgGcGGCGGagcuugUGGaaaUCGCCGACgCCCg -3'
miRNA:   3'- gCCGgCuCCGCU------ACC---AGCGGCUG-GGG- -5'
24423 3' -62.5 NC_005264.1 + 27626 0.67 0.608069
Target:  5'- uGGCU-AGGCGGcUGGUCGCgCGAaCUCg -3'
miRNA:   3'- gCCGGcUCCGCU-ACCAGCG-GCUgGGG- -5'
24423 3' -62.5 NC_005264.1 + 144444 0.71 0.401661
Target:  5'- cCGGCCGGaaCGGUGGUCGuuGuCCgCCu -3'
miRNA:   3'- -GCCGGCUccGCUACCAGCggCuGG-GG- -5'
24423 3' -62.5 NC_005264.1 + 140042 0.67 0.617667
Target:  5'- aCGGUCccucugacaGGGGCGugagcaGuGUCGCCGcGCCCCu -3'
miRNA:   3'- -GCCGG---------CUCCGCua----C-CAGCGGC-UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 37123 0.67 0.608069
Target:  5'- aGGgCGAGGCGGccGUC-UCGGCCUCg -3'
miRNA:   3'- gCCgGCUCCGCUacCAGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 155123 0.68 0.583203
Target:  5'- uGGCCaugcgcagcguuaggGAGGCGAuagugcuuuugUGGUCacuguuguuuGCCGACgCCg -3'
miRNA:   3'- gCCGG---------------CUCCGCU-----------ACCAG----------CGGCUGgGG- -5'
24423 3' -62.5 NC_005264.1 + 20138 0.73 0.293251
Target:  5'- gCGGgC-AGGCGAUGGcgcgcCGCCGGCgCCCa -3'
miRNA:   3'- -GCCgGcUCCGCUACCa----GCGGCUG-GGG- -5'
24423 3' -62.5 NC_005264.1 + 30921 0.73 0.313645
Target:  5'- aGGCCG-GGCGGcucgacguccguccgGGUCGUcaucggCGACCCCg -3'
miRNA:   3'- gCCGGCuCCGCUa--------------CCAGCG------GCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 93824 0.72 0.326665
Target:  5'- uGGCCGAGGUGgcGGUUcgguugGCCGugCgCg -3'
miRNA:   3'- gCCGGCUCCGCuaCCAG------CGGCugGgG- -5'
24423 3' -62.5 NC_005264.1 + 156429 0.71 0.41792
Target:  5'- gCGGCUGGcGGCGGUGaUCGCCucgauAUCCCa -3'
miRNA:   3'- -GCCGGCU-CCGCUACcAGCGGc----UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 123493 0.7 0.434573
Target:  5'- uGGCCGcgcgguugcuGGGCGAUGuGcUCGCgGugUCCa -3'
miRNA:   3'- gCCGGC----------UCCGCUAC-C-AGCGgCugGGG- -5'
24423 3' -62.5 NC_005264.1 + 5277 0.69 0.477818
Target:  5'- gCGGCCGGacGGCGGggcGG-CgGCUGACCCg -3'
miRNA:   3'- -GCCGGCU--CCGCUa--CCaG-CGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 42257 0.68 0.532336
Target:  5'- cCGGCCGGGGCccgccuauugccGGcgcGGUcaaCGCCGcgggGCCCCa -3'
miRNA:   3'- -GCCGGCUCCG------------CUa--CCA---GCGGC----UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 39053 0.68 0.560434
Target:  5'- uGGCCGAguucgcgcGGCGGUccacccccGGaCGCCGGCUCg -3'
miRNA:   3'- gCCGGCU--------CCGCUA--------CCaGCGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 94277 0.68 0.569895
Target:  5'- uGGCCGcacUGAcuaUGGUCGCCGAguauuucgaCCCCg -3'
miRNA:   3'- gCCGGCuccGCU---ACCAGCGGCU---------GGGG- -5'
24423 3' -62.5 NC_005264.1 + 5990 0.74 0.256751
Target:  5'- gGGCCaAGGgGA--GUCGUCGGCCCCg -3'
miRNA:   3'- gCCGGcUCCgCUacCAGCGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 156624 0.68 0.57369
Target:  5'- gCGGCCGcGGCGggGGgucaaaggacgcgucUCGCaCGGCCa- -3'
miRNA:   3'- -GCCGGCuCCGCuaCC---------------AGCG-GCUGGgg -5'
24423 3' -62.5 NC_005264.1 + 19887 0.68 0.578443
Target:  5'- gCGGCCGcgcuagccauuucGGGUGcuuuGUGGUggCGCCGugCCa -3'
miRNA:   3'- -GCCGGC-------------UCCGC----UACCA--GCGGCugGGg -5'
24423 3' -62.5 NC_005264.1 + 150808 0.68 0.588927
Target:  5'- gCGGgCGcuucgccuaaGGGCGgcGGUCGCCG-CCgCa -3'
miRNA:   3'- -GCCgGC----------UCCGCuaCCAGCGGCuGGgG- -5'
24423 3' -62.5 NC_005264.1 + 93079 0.69 0.486722
Target:  5'- gGGCCGcGGCGAccucGGcuucucagcUCGCCGACaUCCg -3'
miRNA:   3'- gCCGGCuCCGCUa---CC---------AGCGGCUG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.