miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24423 3' -62.5 NC_005264.1 + 6578 0.68 0.551018
Target:  5'- --aCCGAGGCGAUgacGGuUUGCauggaGGCCCCa -3'
miRNA:   3'- gccGGCUCCGCUA---CC-AGCGg----CUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 161284 0.68 0.532336
Target:  5'- cCGGCCGGGGCccgccuauugccGGcgcGGUcaaCGCCGcgggGCCCCa -3'
miRNA:   3'- -GCCGGCUCCG------------CUa--CCA---GCGGC----UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 93079 0.69 0.486722
Target:  5'- gGGCCGcGGCGAccucGGcuucucagcUCGCCGACaUCCg -3'
miRNA:   3'- gCCGGCuCCGCUa---CC---------AGCGGCUG-GGG- -5'
24423 3' -62.5 NC_005264.1 + 124304 0.69 0.477818
Target:  5'- gCGGCCGGacGGCGGggcGG-CgGCUGACCCg -3'
miRNA:   3'- -GCCGGCU--CCGCUa--CCaG-CGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 149947 0.69 0.475162
Target:  5'- aGGCCG-GGCGGcUcgacgguccguccgGGUCGUcaucggCGACCCCg -3'
miRNA:   3'- gCCGGCuCCGCU-A--------------CCAGCG------GCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 84323 0.7 0.460256
Target:  5'- gGGCaCGGcGCGAUGGUUaCUGGCCUCa -3'
miRNA:   3'- gCCG-GCUcCGCUACCAGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 122116 0.71 0.40974
Target:  5'- gCGGCCGAggacccguucgGGCGAU--UC-CCGGCCCCc -3'
miRNA:   3'- -GCCGGCU-----------CCGCUAccAGcGGCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 33626 0.71 0.40974
Target:  5'- uCGGCCaGAuuggcGGCGAcgguUGGUCgacggugcuaGCCGACCCa -3'
miRNA:   3'- -GCCGG-CU-----CCGCU----ACCAG----------CGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 158080 0.68 0.560434
Target:  5'- uGGCCGAguucgcgcGGCGGUccacccccGGaCGCCGGCUCg -3'
miRNA:   3'- gCCGGCU--------CCGCUA--------CCaGCGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 40791 0.68 0.561379
Target:  5'- gGcGCCGAGaGCGGagccgcuugccgcggGGUCGCCGAgacucaagaUCCCg -3'
miRNA:   3'- gC-CGGCUC-CGCUa--------------CCAGCGGCU---------GGGG- -5'
24423 3' -62.5 NC_005264.1 + 125260 0.66 0.703682
Target:  5'- gCGGCCGccGCGAgacUUGCCGcCUCCg -3'
miRNA:   3'- -GCCGGCucCGCUaccAGCGGCuGGGG- -5'
24423 3' -62.5 NC_005264.1 + 110588 0.66 0.69424
Target:  5'- uGGCCG-GGUGAguaGG-CGggGGCCCCg -3'
miRNA:   3'- gCCGGCuCCGCUa--CCaGCggCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 87444 0.66 0.684753
Target:  5'- gCGGCCGcgcAGaCGGUGGcgCGCaccaCGACUCCg -3'
miRNA:   3'- -GCCGGC---UCcGCUACCa-GCG----GCUGGGG- -5'
24423 3' -62.5 NC_005264.1 + 82954 0.66 0.675228
Target:  5'- -cGCCu--GCGAcGGUCGCCGccgcGCCCCc -3'
miRNA:   3'- gcCGGcucCGCUaCCAGCGGC----UGGGG- -5'
24423 3' -62.5 NC_005264.1 + 123167 0.66 0.65609
Target:  5'- aCGGCCGcuugucGCGAUGcUUGCCG-CCCa -3'
miRNA:   3'- -GCCGGCuc----CGCUACcAGCGGCuGGGg -5'
24423 3' -62.5 NC_005264.1 + 60888 0.66 0.65609
Target:  5'- uCGGCguaCGccGCGGUGGg-GCCGACgCCg -3'
miRNA:   3'- -GCCG---GCucCGCUACCagCGGCUGgGG- -5'
24423 3' -62.5 NC_005264.1 + 157232 0.68 0.579394
Target:  5'- gCGGcCCGAuagcGGCuccGGUCGCCGAUCUg -3'
miRNA:   3'- -GCC-GGCU----CCGcuaCCAGCGGCUGGGg -5'
24423 3' -62.5 NC_005264.1 + 19887 0.68 0.578443
Target:  5'- gCGGCCGcgcuagccauuucGGGUGcuuuGUGGUggCGCCGugCCa -3'
miRNA:   3'- -GCCGGC-------------UCCGC----UACCA--GCGGCugGGg -5'
24423 3' -62.5 NC_005264.1 + 156624 0.68 0.57369
Target:  5'- gCGGCCGcGGCGggGGgucaaaggacgcgucUCGCaCGGCCa- -3'
miRNA:   3'- -GCCGGCuCCGCuaCC---------------AGCG-GCUGGgg -5'
24423 3' -62.5 NC_005264.1 + 16914 0.68 0.569895
Target:  5'- uCGGCCGcGGaCGAUGG-CGgCGGCguucuuCCCg -3'
miRNA:   3'- -GCCGGCuCC-GCUACCaGCgGCUG------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.