miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24424 3' -44.7 NC_005264.1 + 103661 0.66 0.999999
Target:  5'- aGACGAGGACUUGGgggagaACUGgcagcUGGGCGa -3'
miRNA:   3'- cCUGCUUUUGAACU------UGGUa----ACCUGUa -5'
24424 3' -44.7 NC_005264.1 + 14907 0.66 0.999999
Target:  5'- uGGACGuGGAGCU---GCCAUUcaaGGACAa -3'
miRNA:   3'- -CCUGC-UUUUGAacuUGGUAA---CCUGUa -5'
24424 3' -44.7 NC_005264.1 + 64120 0.66 0.999998
Target:  5'- uGGGCGGAA---UGAACUAUaugacguucgUGGGCAUc -3'
miRNA:   3'- -CCUGCUUUugaACUUGGUA----------ACCUGUA- -5'
24424 3' -44.7 NC_005264.1 + 157852 0.66 0.999997
Target:  5'- cGGACGAGAACgacGACgAUgcgcGGGCAc -3'
miRNA:   3'- -CCUGCUUUUGaacUUGgUAa---CCUGUa -5'
24424 3' -44.7 NC_005264.1 + 38826 0.66 0.999997
Target:  5'- cGGACGAGAACgacGACgAUgcgcGGGCAc -3'
miRNA:   3'- -CCUGCUUUUGaacUUGgUAa---CCUGUa -5'
24424 3' -44.7 NC_005264.1 + 63159 0.67 0.999993
Target:  5'- cGGCGAGGGCaUGAACCcugccgcgUGGGCc- -3'
miRNA:   3'- cCUGCUUUUGaACUUGGua------ACCUGua -5'
24424 3' -44.7 NC_005264.1 + 54580 0.68 0.999976
Target:  5'- gGGGCGcgacgggucggagauGGAGCUUGAGCUAgugucGGGCAc -3'
miRNA:   3'- -CCUGC---------------UUUUGAACUUGGUaa---CCUGUa -5'
24424 3' -44.7 NC_005264.1 + 150554 0.68 0.999963
Target:  5'- cGGGCGggGA---GGGCCGUUGGGg-- -3'
miRNA:   3'- -CCUGCuuUUgaaCUUGGUAACCUgua -5'
24424 3' -44.7 NC_005264.1 + 31527 0.68 0.999963
Target:  5'- cGGGCGggGA---GGGCCGUUGGGg-- -3'
miRNA:   3'- -CCUGCuuUUgaaCUUGGUAACCUgua -5'
24424 3' -44.7 NC_005264.1 + 29379 0.68 0.99995
Target:  5'- cGAUGAgcugGAGCUUGAGCCGUaagcgUGcGGCAc -3'
miRNA:   3'- cCUGCU----UUUGAACUUGGUA-----AC-CUGUa -5'
24424 3' -44.7 NC_005264.1 + 126301 0.68 0.999933
Target:  5'- aGGACGAAGACggcgGGGCCuagcGACGg -3'
miRNA:   3'- -CCUGCUUUUGaa--CUUGGuaacCUGUa -5'
24424 3' -44.7 NC_005264.1 + 5837 0.68 0.999933
Target:  5'- -cGCGAAAGCUUGAGgUAUcGGACc- -3'
miRNA:   3'- ccUGCUUUUGAACUUgGUAaCCUGua -5'
24424 3' -44.7 NC_005264.1 + 7274 0.68 0.999933
Target:  5'- aGGACGAAGACggcgGGGCCuagcGACGg -3'
miRNA:   3'- -CCUGCUUUUGaa--CUUGGuaacCUGUa -5'
24424 3' -44.7 NC_005264.1 + 84906 0.7 0.999582
Target:  5'- aGGACGGGAggGCgggaaGAGCCAggcgcgGGACAa -3'
miRNA:   3'- -CCUGCUUU--UGaa---CUUGGUaa----CCUGUa -5'
24424 3' -44.7 NC_005264.1 + 96567 0.7 0.999341
Target:  5'- gGGAUGcAAGCUUgGAAUCGUUGuGACAc -3'
miRNA:   3'- -CCUGCuUUUGAA-CUUGGUAAC-CUGUa -5'
24424 3' -44.7 NC_005264.1 + 31458 0.71 0.999181
Target:  5'- cGACGAGAGCguc-GCCGaUGGGCGUg -3'
miRNA:   3'- cCUGCUUUUGaacuUGGUaACCUGUA- -5'
24424 3' -44.7 NC_005264.1 + 150485 0.71 0.999181
Target:  5'- cGACGAGAGCguc-GCCGaUGGGCGUg -3'
miRNA:   3'- cCUGCUUUUGaacuUGGUaACCUGUA- -5'
24424 3' -44.7 NC_005264.1 + 9957 0.71 0.998759
Target:  5'- cGGCGAgGGACUgccGGACCcgUGGGCGa -3'
miRNA:   3'- cCUGCU-UUUGAa--CUUGGuaACCUGUa -5'
24424 3' -44.7 NC_005264.1 + 54275 0.72 0.996838
Target:  5'- gGGGCGAGGACcauGGCCAaUUGGGCGa -3'
miRNA:   3'- -CCUGCUUUUGaacUUGGU-AACCUGUa -5'
24424 3' -44.7 NC_005264.1 + 33643 0.75 0.98397
Target:  5'- gGGACGAGGGCUgGGACCAagcgGGugGc -3'
miRNA:   3'- -CCUGCUUUUGAaCUUGGUaa--CCugUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.