miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24424 5' -58.2 NC_005264.1 + 57480 0.66 0.86394
Target:  5'- uCCugGCGGCGGcGGcgaagAUGCUggCGCg -3'
miRNA:   3'- -GGugCGCCGUC-CCaag--UACGGgaGCG- -5'
24424 5' -58.2 NC_005264.1 + 41733 0.66 0.86394
Target:  5'- gCCAgGCGGCAGcGGcgUAUGUgCU-GCg -3'
miRNA:   3'- -GGUgCGCCGUC-CCaaGUACGgGAgCG- -5'
24424 5' -58.2 NC_005264.1 + 122827 0.66 0.86394
Target:  5'- uCUGCGUGGCGGuccgcgaGUUCggGCCCggGCg -3'
miRNA:   3'- -GGUGCGCCGUCc------CAAGuaCGGGagCG- -5'
24424 5' -58.2 NC_005264.1 + 38288 0.66 0.86394
Target:  5'- -gACgGCGGCGacGUUCGUuacGCCUUCGCg -3'
miRNA:   3'- ggUG-CGCCGUccCAAGUA---CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 157315 0.66 0.86394
Target:  5'- -gACgGCGGCGacGUUCGUuacGCCUUCGCg -3'
miRNA:   3'- ggUG-CGCCGUccCAAGUA---CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 3801 0.66 0.86394
Target:  5'- uCUGCGUGGCGGuccgcgaGUUCggGCCCggGCg -3'
miRNA:   3'- -GGUGCGCCGUCc------CAAGuaCGGGagCG- -5'
24424 5' -58.2 NC_005264.1 + 12762 0.66 0.858746
Target:  5'- cCCAUGgGGCAGcgccGGgcacaacgaugcggUCAUGCCUggcauguUCGCa -3'
miRNA:   3'- -GGUGCgCCGUC----CCa-------------AGUACGGG-------AGCG- -5'
24424 5' -58.2 NC_005264.1 + 98930 0.66 0.856491
Target:  5'- uCCACGCGGCAcGGcggcaacuUUCAguugGagCUCGCa -3'
miRNA:   3'- -GGUGCGCCGUcCC--------AAGUa---CggGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 56259 0.66 0.856491
Target:  5'- cCCAUGCGGUuuGcGGUcugcUCcaccGCCUUCGCg -3'
miRNA:   3'- -GGUGCGCCGu-C-CCA----AGua--CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 99747 0.66 0.856491
Target:  5'- gCACGaGGUAGGccuUUCcgcgacgGCCCUCGCc -3'
miRNA:   3'- gGUGCgCCGUCCc--AAGua-----CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 71069 0.66 0.855735
Target:  5'- cCUGCGCGGguGGGccccuuguaucuaUUUGUcaacagccGCCCUCGg -3'
miRNA:   3'- -GGUGCGCCguCCC-------------AAGUA--------CGGGAGCg -5'
24424 5' -58.2 NC_005264.1 + 110384 0.66 0.848849
Target:  5'- aCCGcCGaCGGC-GGGcgCAUGCUgaCGCu -3'
miRNA:   3'- -GGU-GC-GCCGuCCCaaGUACGGgaGCG- -5'
24424 5' -58.2 NC_005264.1 + 29715 0.66 0.848849
Target:  5'- cCCGCGCuuagagacgaucGGCAGcaGGUgcucagcuagaUCGUGCagCUCGCa -3'
miRNA:   3'- -GGUGCG------------CCGUC--CCA-----------AGUACGg-GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 12288 0.66 0.848849
Target:  5'- cCCugGCGGCAGGGcg-GUGCgCa--- -3'
miRNA:   3'- -GGugCGCCGUCCCaagUACGgGagcg -5'
24424 5' -58.2 NC_005264.1 + 87662 0.66 0.847299
Target:  5'- aCCugGCGGCAacGGGcagcugaaaggCGUGUCCguauugUGCg -3'
miRNA:   3'- -GGugCGCCGU--CCCaa---------GUACGGGa-----GCG- -5'
24424 5' -58.2 NC_005264.1 + 5155 0.66 0.841022
Target:  5'- gCCGCGCcGCAucGUccgaagccuauUCGgagGCCCUCGCg -3'
miRNA:   3'- -GGUGCGcCGUccCA-----------AGUa--CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 125663 0.66 0.841022
Target:  5'- gCCACGCGG--GGGcaCAUGUCCggaaGCu -3'
miRNA:   3'- -GGUGCGCCguCCCaaGUACGGGag--CG- -5'
24424 5' -58.2 NC_005264.1 + 71926 0.66 0.841022
Target:  5'- -gGCGCucugcaGGCAGGaGaUCGUGCCCccaaCGCc -3'
miRNA:   3'- ggUGCG------CCGUCC-CaAGUACGGGa---GCG- -5'
24424 5' -58.2 NC_005264.1 + 6636 0.66 0.841022
Target:  5'- gCCACGCGG--GGGcaCAUGUCCggaaGCu -3'
miRNA:   3'- -GGUGCGCCguCCCaaGUACGGGag--CG- -5'
24424 5' -58.2 NC_005264.1 + 31670 0.66 0.840229
Target:  5'- aCUGCGCgaGGCAGGGcucUCGgcggggcUGCCCgccaaaggUCGCg -3'
miRNA:   3'- -GGUGCG--CCGUCCCa--AGU-------ACGGG--------AGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.