miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24424 5' -58.2 NC_005264.1 + 99677 1.12 0.001329
Target:  5'- cCCACGCGGCAGGGUUCAUGCCCUCGCc -3'
miRNA:   3'- -GGUGCGCCGUCCCAAGUACGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 122521 0.82 0.130905
Target:  5'- gCACGCGGCGGGGggCAgggGaUCCUCGCc -3'
miRNA:   3'- gGUGCGCCGUCCCaaGUa--C-GGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 3494 0.82 0.130905
Target:  5'- gCACGCGGCGGGGggCAgggGaUCCUCGCc -3'
miRNA:   3'- gGUGCGCCGUCCCaaGUa--C-GGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 16103 0.81 0.172214
Target:  5'- aCUGCGCGGCcGGGUUCuuucUGCCC-CGCu -3'
miRNA:   3'- -GGUGCGCCGuCCCAAGu---ACGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 70205 0.79 0.214297
Target:  5'- gCCACGCGGCAGGGau-GUGauaCUCGCa -3'
miRNA:   3'- -GGUGCGCCGUCCCaagUACgg-GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 16077 0.76 0.310647
Target:  5'- gCCGCGCGGCGcuugcuguugccGGGUcCGccGCCCUCGUu -3'
miRNA:   3'- -GGUGCGCCGU------------CCCAaGUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 77316 0.76 0.324776
Target:  5'- gUCGCG-GGCGaguuGGUUCAuUGCCCUCGCg -3'
miRNA:   3'- -GGUGCgCCGUc---CCAAGU-ACGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 79302 0.75 0.354447
Target:  5'- gCCGCGU-GCGGGG-UCAUGUCgCUCGCc -3'
miRNA:   3'- -GGUGCGcCGUCCCaAGUACGG-GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 138491 0.75 0.385981
Target:  5'- gCCAgaGCGGCGGGGa-UAUGCCC-CGCc -3'
miRNA:   3'- -GGUg-CGCCGUCCCaaGUACGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 160776 0.74 0.410815
Target:  5'- uUCACGCuuGCAGGGuUUCAUGCUugCUUGCa -3'
miRNA:   3'- -GGUGCGc-CGUCCC-AAGUACGG--GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 41750 0.74 0.410815
Target:  5'- uUCACGCuuGCAGGGuUUCAUGCUugCUUGCa -3'
miRNA:   3'- -GGUGCGc-CGUCCC-AAGUACGG--GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 59466 0.73 0.448974
Target:  5'- cCCGCGCGGCAGGcaugacgacuggCAUGUacuuCCUCGUa -3'
miRNA:   3'- -GGUGCGCCGUCCcaa---------GUACG----GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 127193 0.73 0.454328
Target:  5'- -uGCGCGaagcGCAGGuacaaCGUGCCCUCGCa -3'
miRNA:   3'- ggUGCGC----CGUCCcaa--GUACGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 67627 0.73 0.463328
Target:  5'- gCCACGCGggcGCAGGG---GUGUCCUgCGCg -3'
miRNA:   3'- -GGUGCGC---CGUCCCaagUACGGGA-GCG- -5'
24424 5' -58.2 NC_005264.1 + 91559 0.73 0.472421
Target:  5'- -gGCGCGGCGGGGggCAcgagGCUUgUCGCg -3'
miRNA:   3'- ggUGCGCCGUCCCaaGUa---CGGG-AGCG- -5'
24424 5' -58.2 NC_005264.1 + 44465 0.73 0.481603
Target:  5'- aCCAaGCGGCAGGcGUUCGUGaCCaUCGa -3'
miRNA:   3'- -GGUgCGCCGUCC-CAAGUAC-GGgAGCg -5'
24424 5' -58.2 NC_005264.1 + 93861 0.73 0.490871
Target:  5'- -aAUGCGGCGGGuagUCGUGCCgUgGCa -3'
miRNA:   3'- ggUGCGCCGUCCca-AGUACGGgAgCG- -5'
24424 5' -58.2 NC_005264.1 + 159027 0.72 0.509648
Target:  5'- uCCGCGC-GCAGGGagCAccUCCUCGCa -3'
miRNA:   3'- -GGUGCGcCGUCCCaaGUacGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 53923 0.72 0.519148
Target:  5'- gCCACGCGGCucGGGUUCc--UCgUCGCu -3'
miRNA:   3'- -GGUGCGCCGu-CCCAAGuacGGgAGCG- -5'
24424 5' -58.2 NC_005264.1 + 107714 0.72 0.528718
Target:  5'- gCGCaCGGCGGGGUgUCGaaCCCUCGUg -3'
miRNA:   3'- gGUGcGCCGUCCCA-AGUacGGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.