Results 21 - 40 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24424 | 5' | -58.2 | NC_005264.1 | + | 85433 | 0.72 | 0.538353 |
Target: 5'- aCCGCGCGGaCAGGGagCGcuUGCCggCGUc -3' miRNA: 3'- -GGUGCGCC-GUCCCaaGU--ACGGgaGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 123495 | 0.71 | 0.548047 |
Target: 5'- gCCGCGCGGUugcuGGGcg-AUGUgCUCGCg -3' miRNA: 3'- -GGUGCGCCGu---CCCaagUACGgGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 47851 | 0.71 | 0.548047 |
Target: 5'- cCCcCGUGGCGGGGgcaggGCCCaauuuUCGCg -3' miRNA: 3'- -GGuGCGCCGUCCCaaguaCGGG-----AGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 40738 | 0.71 | 0.557795 |
Target: 5'- -aACGCGGCAGaGUUCAcGgCCUCGg -3' miRNA: 3'- ggUGCGCCGUCcCAAGUaCgGGAGCg -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 20235 | 0.71 | 0.577432 |
Target: 5'- cCCGCGCgugacgggugGGCAGGGguugCGgcgcGgCCUCGCg -3' miRNA: 3'- -GGUGCG----------CCGUCCCaa--GUa---CgGGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 57989 | 0.71 | 0.577432 |
Target: 5'- cCCGCGCGGCGGccguGGcUCAgcgGCCC-CGg -3' miRNA: 3'- -GGUGCGCCGUC----CCaAGUa--CGGGaGCg -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 11648 | 0.7 | 0.617098 |
Target: 5'- -aGCGCGGCAGGGcugCugucGUCgUCGCg -3' miRNA: 3'- ggUGCGCCGUCCCaa-Gua--CGGgAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 89834 | 0.7 | 0.627058 |
Target: 5'- gCCGCGaaac-GGGUUCAUGCCUaguUCGCa -3' miRNA: 3'- -GGUGCgccguCCCAAGUACGGG---AGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 122332 | 0.7 | 0.637022 |
Target: 5'- aCCACGUGGaaGGGGUUCGgguugGCCCa--- -3' miRNA: 3'- -GGUGCGCCg-UCCCAAGUa----CGGGagcg -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 93080 | 0.7 | 0.643995 |
Target: 5'- cCCGaauuCGUGGCAGGGccaguucugagaagUUCgGUGCCCgCGCu -3' miRNA: 3'- -GGU----GCGCCGUCCC--------------AAG-UACGGGaGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 83730 | 0.7 | 0.656932 |
Target: 5'- gUACGCGGCGGcagagAUGCCCUCuGCg -3' miRNA: 3'- gGUGCGCCGUCccaagUACGGGAG-CG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 99931 | 0.7 | 0.656932 |
Target: 5'- cCCGCGCGGCuaagcuGGUggacUCGUGCCaaCGUg -3' miRNA: 3'- -GGUGCGCCGuc----CCA----AGUACGGgaGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 156690 | 0.7 | 0.656932 |
Target: 5'- gCACGCGauGCGcgacGGGcgCGcgGCCCUCGCc -3' miRNA: 3'- gGUGCGC--CGU----CCCaaGUa-CGGGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 37664 | 0.7 | 0.656932 |
Target: 5'- gCACGCGauGCGcgacGGGcgCGcgGCCCUCGCc -3' miRNA: 3'- gGUGCGC--CGU----CCCaaGUa-CGGGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 146089 | 0.69 | 0.673799 |
Target: 5'- cCCGCGCGGgucuugguggacuaCGcauucGGGUUCGUGCgCCaUCGUg -3' miRNA: 3'- -GGUGCGCC--------------GU-----CCCAAGUACG-GG-AGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 75210 | 0.69 | 0.676766 |
Target: 5'- cCCACGCGGCuGca-UCG-GCCCUgCGCg -3' miRNA: 3'- -GGUGCGCCGuCccaAGUaCGGGA-GCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 82855 | 0.69 | 0.680719 |
Target: 5'- uCCGCGCGGCcGGcaUCGgucucuguuugcugGCCgUCGCg -3' miRNA: 3'- -GGUGCGCCGuCCcaAGUa-------------CGGgAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 158588 | 0.69 | 0.686635 |
Target: 5'- cCCGCGCGGCAagccGGGacugaUCua-CCUUCGCg -3' miRNA: 3'- -GGUGCGCCGU----CCCa----AGuacGGGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 39561 | 0.69 | 0.686635 |
Target: 5'- cCCGCGCGGCAagccGGGacugaUCua-CCUUCGCg -3' miRNA: 3'- -GGUGCGCCGU----CCCa----AGuacGGGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 21782 | 0.69 | 0.715953 |
Target: 5'- uUugGCGGCAGucguaguuGGaguagUCGUGUCCUCGa -3' miRNA: 3'- gGugCGCCGUC--------CCa----AGUACGGGAGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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