miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24424 5' -58.2 NC_005264.1 + 98870 0.68 0.725601
Target:  5'- gCAaGCGGUagcGGGGUUC-UGUcuuCCUCGCa -3'
miRNA:   3'- gGUgCGCCG---UCCCAAGuACG---GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 156627 0.68 0.725601
Target:  5'- gC-CGCGGCGGGGggUCAaaggacGCgUCUCGCa -3'
miRNA:   3'- gGuGCGCCGUCCCa-AGUa-----CG-GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 37600 0.68 0.725601
Target:  5'- gC-CGCGGCGGGGggUCAaaggacGCgUCUCGCa -3'
miRNA:   3'- gGuGCGCCGUCCCa-AGUa-----CG-GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 136952 0.68 0.734219
Target:  5'- gCCugGgGcaucgcaaucuacGCAGGGUUCGaGCgUCUCGCg -3'
miRNA:   3'- -GGugCgC-------------CGUCCCAAGUaCG-GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 35899 0.68 0.735173
Target:  5'- -gGCGUGGUgucGGGG-UCGcugGCUCUCGCu -3'
miRNA:   3'- ggUGCGCCG---UCCCaAGUa--CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 29464 0.68 0.74466
Target:  5'- cCCACGCGGauuGGGGggCgGUGCag-CGCa -3'
miRNA:   3'- -GGUGCGCCg--UCCCaaG-UACGggaGCG- -5'
24424 5' -58.2 NC_005264.1 + 120498 0.68 0.74466
Target:  5'- gUAgGUGGCGGGGgcgagGCCCUCa- -3'
miRNA:   3'- gGUgCGCCGUCCCaaguaCGGGAGcg -5'
24424 5' -58.2 NC_005264.1 + 121901 0.68 0.74466
Target:  5'- gCCGCGCGauGCGGGucuGUUCAgaagcuaGCCCgCGCc -3'
miRNA:   3'- -GGUGCGC--CGUCC---CAAGUa------CGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 71824 0.68 0.74466
Target:  5'- aUACGCGGCAgcauGGGUccucCGUaGCCCaUCGUu -3'
miRNA:   3'- gGUGCGCCGU----CCCAa---GUA-CGGG-AGCG- -5'
24424 5' -58.2 NC_005264.1 + 150697 0.68 0.76242
Target:  5'- aCGCGCgaGGCAGGGcucUCGgcggggcUGCCCgccaaaggUCGCg -3'
miRNA:   3'- gGUGCG--CCGUCCCa--AGU-------ACGGG--------AGCG- -5'
24424 5' -58.2 NC_005264.1 + 58215 0.68 0.763345
Target:  5'- cCCGCGCGcGCugguuGGGauaugUUuUGCCCgugCGCg -3'
miRNA:   3'- -GGUGCGC-CGu----CCCa----AGuACGGGa--GCG- -5'
24424 5' -58.2 NC_005264.1 + 146417 0.67 0.781588
Target:  5'- gCCcCGCGGCAG---UCGagcgGCCCUUGCc -3'
miRNA:   3'- -GGuGCGCCGUCccaAGUa---CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 90585 0.67 0.781588
Target:  5'- -aGCGCGGCAGG--UCGcGCCUUgccCGCg -3'
miRNA:   3'- ggUGCGCCGUCCcaAGUaCGGGA---GCG- -5'
24424 5' -58.2 NC_005264.1 + 35800 0.67 0.790524
Target:  5'- gCCGuCGUGGCGGGcGccucugCcgGCCC-CGCa -3'
miRNA:   3'- -GGU-GCGCCGUCC-Caa----GuaCGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 155282 0.67 0.790524
Target:  5'- gCACGUGGCGgaagcGGGUagGccGUCCUCGUg -3'
miRNA:   3'- gGUGCGCCGU-----CCCAagUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 36255 0.67 0.790524
Target:  5'- gCACGUGGCGgaagcGGGUagGccGUCCUCGUg -3'
miRNA:   3'- gGUGCGCCGU-----CCCAagUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 154826 0.67 0.790524
Target:  5'- gCCGuCGUGGCGGGcGccucugCcgGCCC-CGCa -3'
miRNA:   3'- -GGU-GCGCCGUCC-Caa----GuaCGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 11765 0.67 0.799324
Target:  5'- -gGCGCGGCGaaacGGUUgAcGCUCUCGUa -3'
miRNA:   3'- ggUGCGCCGUc---CCAAgUaCGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 152374 0.67 0.799324
Target:  5'- aCUACauugaCGGCGGcGG-UCAcucUGCCCUCGUc -3'
miRNA:   3'- -GGUGc----GCCGUC-CCaAGU---ACGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 981 0.67 0.799324
Target:  5'- -gGgGCGGCAGGuGggCcuccCCCUCGCg -3'
miRNA:   3'- ggUgCGCCGUCC-CaaGuac-GGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.