miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24424 5' -58.2 NC_005264.1 + 120007 0.66 0.833014
Target:  5'- -gGgGCGGCAGGuGggCcucccCCCUCGCg -3'
miRNA:   3'- ggUgCGCCGUCC-CaaGuac--GGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 114688 0.66 0.833014
Target:  5'- gCCACGcCGaGCAGgauugcgcGGUcUCGUGCgCCUCGa -3'
miRNA:   3'- -GGUGC-GC-CGUC--------CCA-AGUACG-GGAGCg -5'
24424 5' -58.2 NC_005264.1 + 60893 0.66 0.833014
Target:  5'- gCCAgGCGGgAcGGcGUaaagaucuucuUUAUGUCCUCGCc -3'
miRNA:   3'- -GGUgCGCCgU-CC-CA-----------AGUACGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 6539 0.66 0.833014
Target:  5'- ---gGCGGCAGGGggcuUCGgcaggaGCgCCUCGUc -3'
miRNA:   3'- ggugCGCCGUCCCa---AGUa-----CG-GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 52686 0.66 0.833014
Target:  5'- cCCAaagcCGCGGCGGGuUUCGccGCCCgcccccaaaagCGCg -3'
miRNA:   3'- -GGU----GCGCCGUCCcAAGUa-CGGGa----------GCG- -5'
24424 5' -58.2 NC_005264.1 + 125566 0.66 0.833014
Target:  5'- ---gGCGGCAGGGggcuUCGgcaggaGCgCCUCGUc -3'
miRNA:   3'- ggugCGCCGUCCCa---AGUa-----CG-GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 67412 0.67 0.828126
Target:  5'- uCCACGaCGGCuuuGGGUUCuUucccgccuaucugaaGCCCcUGCa -3'
miRNA:   3'- -GGUGC-GCCGu--CCCAAGuA---------------CGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 78605 0.67 0.824833
Target:  5'- uCCACGCGGUAGG---CAaGCUCgcggCGCc -3'
miRNA:   3'- -GGUGCGCCGUCCcaaGUaCGGGa---GCG- -5'
24424 5' -58.2 NC_005264.1 + 28704 0.67 0.824833
Target:  5'- cUCGCGCGGUuaugucuuauGGGGcUCuaguUGCCUgCGCc -3'
miRNA:   3'- -GGUGCGCCG----------UCCCaAGu---ACGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 3986 0.67 0.824833
Target:  5'- aCCGC-CaGCAGGGcggcaCAUGCCucCUCGCc -3'
miRNA:   3'- -GGUGcGcCGUCCCaa---GUACGG--GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 34893 0.67 0.816486
Target:  5'- gCCGcCGCcuucuucgagGGCAGGGUUacugGCCCagugCGCc -3'
miRNA:   3'- -GGU-GCG----------CCGUCCCAAgua-CGGGa---GCG- -5'
24424 5' -58.2 NC_005264.1 + 89192 0.67 0.807981
Target:  5'- cCCG-GCGGCAGGuGUcCGUGCCUagGa -3'
miRNA:   3'- -GGUgCGCCGUCC-CAaGUACGGGagCg -5'
24424 5' -58.2 NC_005264.1 + 116411 0.67 0.807981
Target:  5'- gCCgACGuCGagcGCAGGGcggCGUGCagCCUCGCg -3'
miRNA:   3'- -GG-UGC-GC---CGUCCCaa-GUACG--GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 1004 0.67 0.805399
Target:  5'- cCCGCGCccguguggugggggGGCAGGGgccgUUcUGUauUCUCGCg -3'
miRNA:   3'- -GGUGCG--------------CCGUCCCa---AGuACG--GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 11765 0.67 0.799324
Target:  5'- -gGCGCGGCGaaacGGUUgAcGCUCUCGUa -3'
miRNA:   3'- ggUGCGCCGUc---CCAAgUaCGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 981 0.67 0.799324
Target:  5'- -gGgGCGGCAGGuGggCcuccCCCUCGCg -3'
miRNA:   3'- ggUgCGCCGUCC-CaaGuac-GGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 152374 0.67 0.799324
Target:  5'- aCUACauugaCGGCGGcGG-UCAcucUGCCCUCGUc -3'
miRNA:   3'- -GGUGc----GCCGUC-CCaAGU---ACGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 155282 0.67 0.790524
Target:  5'- gCACGUGGCGgaagcGGGUagGccGUCCUCGUg -3'
miRNA:   3'- gGUGCGCCGU-----CCCAagUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 36255 0.67 0.790524
Target:  5'- gCACGUGGCGgaagcGGGUagGccGUCCUCGUg -3'
miRNA:   3'- gGUGCGCCGU-----CCCAagUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 154826 0.67 0.790524
Target:  5'- gCCGuCGUGGCGGGcGccucugCcgGCCC-CGCa -3'
miRNA:   3'- -GGU-GCGCCGUCC-Caa----GuaCGGGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.