miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24424 5' -58.2 NC_005264.1 + 37664 0.7 0.656932
Target:  5'- gCACGCGauGCGcgacGGGcgCGcgGCCCUCGCc -3'
miRNA:   3'- gGUGCGC--CGU----CCCaaGUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 99931 0.7 0.656932
Target:  5'- cCCGCGCGGCuaagcuGGUggacUCGUGCCaaCGUg -3'
miRNA:   3'- -GGUGCGCCGuc----CCA----AGUACGGgaGCG- -5'
24424 5' -58.2 NC_005264.1 + 83730 0.7 0.656932
Target:  5'- gUACGCGGCGGcagagAUGCCCUCuGCg -3'
miRNA:   3'- gGUGCGCCGUCccaagUACGGGAG-CG- -5'
24424 5' -58.2 NC_005264.1 + 156690 0.7 0.656932
Target:  5'- gCACGCGauGCGcgacGGGcgCGcgGCCCUCGCc -3'
miRNA:   3'- gGUGCGC--CGU----CCCaaGUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 93080 0.7 0.643995
Target:  5'- cCCGaauuCGUGGCAGGGccaguucugagaagUUCgGUGCCCgCGCu -3'
miRNA:   3'- -GGU----GCGCCGUCCC--------------AAG-UACGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 122332 0.7 0.637022
Target:  5'- aCCACGUGGaaGGGGUUCGgguugGCCCa--- -3'
miRNA:   3'- -GGUGCGCCg-UCCCAAGUa----CGGGagcg -5'
24424 5' -58.2 NC_005264.1 + 89834 0.7 0.627058
Target:  5'- gCCGCGaaac-GGGUUCAUGCCUaguUCGCa -3'
miRNA:   3'- -GGUGCgccguCCCAAGUACGGG---AGCG- -5'
24424 5' -58.2 NC_005264.1 + 11648 0.7 0.617098
Target:  5'- -aGCGCGGCAGGGcugCugucGUCgUCGCg -3'
miRNA:   3'- ggUGCGCCGUCCCaa-Gua--CGGgAGCG- -5'
24424 5' -58.2 NC_005264.1 + 20235 0.71 0.577432
Target:  5'- cCCGCGCgugacgggugGGCAGGGguugCGgcgcGgCCUCGCg -3'
miRNA:   3'- -GGUGCG----------CCGUCCCaa--GUa---CgGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 57989 0.71 0.577432
Target:  5'- cCCGCGCGGCGGccguGGcUCAgcgGCCC-CGg -3'
miRNA:   3'- -GGUGCGCCGUC----CCaAGUa--CGGGaGCg -5'
24424 5' -58.2 NC_005264.1 + 40738 0.71 0.557795
Target:  5'- -aACGCGGCAGaGUUCAcGgCCUCGg -3'
miRNA:   3'- ggUGCGCCGUCcCAAGUaCgGGAGCg -5'
24424 5' -58.2 NC_005264.1 + 47851 0.71 0.548047
Target:  5'- cCCcCGUGGCGGGGgcaggGCCCaauuuUCGCg -3'
miRNA:   3'- -GGuGCGCCGUCCCaaguaCGGG-----AGCG- -5'
24424 5' -58.2 NC_005264.1 + 123495 0.71 0.548047
Target:  5'- gCCGCGCGGUugcuGGGcg-AUGUgCUCGCg -3'
miRNA:   3'- -GGUGCGCCGu---CCCaagUACGgGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 85433 0.72 0.538353
Target:  5'- aCCGCGCGGaCAGGGagCGcuUGCCggCGUc -3'
miRNA:   3'- -GGUGCGCC-GUCCCaaGU--ACGGgaGCG- -5'
24424 5' -58.2 NC_005264.1 + 107714 0.72 0.528718
Target:  5'- gCGCaCGGCGGGGUgUCGaaCCCUCGUg -3'
miRNA:   3'- gGUGcGCCGUCCCA-AGUacGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 53923 0.72 0.519148
Target:  5'- gCCACGCGGCucGGGUUCc--UCgUCGCu -3'
miRNA:   3'- -GGUGCGCCGu-CCCAAGuacGGgAGCG- -5'
24424 5' -58.2 NC_005264.1 + 159027 0.72 0.509648
Target:  5'- uCCGCGC-GCAGGGagCAccUCCUCGCa -3'
miRNA:   3'- -GGUGCGcCGUCCCaaGUacGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 93861 0.73 0.490871
Target:  5'- -aAUGCGGCGGGuagUCGUGCCgUgGCa -3'
miRNA:   3'- ggUGCGCCGUCCca-AGUACGGgAgCG- -5'
24424 5' -58.2 NC_005264.1 + 44465 0.73 0.481603
Target:  5'- aCCAaGCGGCAGGcGUUCGUGaCCaUCGa -3'
miRNA:   3'- -GGUgCGCCGUCC-CAAGUAC-GGgAGCg -5'
24424 5' -58.2 NC_005264.1 + 91559 0.73 0.472421
Target:  5'- -gGCGCGGCGGGGggCAcgagGCUUgUCGCg -3'
miRNA:   3'- ggUGCGCCGUCCCaaGUa---CGGG-AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.