miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24424 5' -58.2 NC_005264.1 + 981 0.67 0.799324
Target:  5'- -gGgGCGGCAGGuGggCcuccCCCUCGCg -3'
miRNA:   3'- ggUgCGCCGUCC-CaaGuac-GGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 1004 0.67 0.805399
Target:  5'- cCCGCGCccguguggugggggGGCAGGGgccgUUcUGUauUCUCGCg -3'
miRNA:   3'- -GGUGCG--------------CCGUCCCa---AGuACG--GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 3494 0.82 0.130905
Target:  5'- gCACGCGGCGGGGggCAgggGaUCCUCGCc -3'
miRNA:   3'- gGUGCGCCGUCCCaaGUa--C-GGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 3801 0.66 0.86394
Target:  5'- uCUGCGUGGCGGuccgcgaGUUCggGCCCggGCg -3'
miRNA:   3'- -GGUGCGCCGUCc------CAAGuaCGGGagCG- -5'
24424 5' -58.2 NC_005264.1 + 3986 0.67 0.824833
Target:  5'- aCCGC-CaGCAGGGcggcaCAUGCCucCUCGCc -3'
miRNA:   3'- -GGUGcGcCGUCCCaa---GUACGG--GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 5155 0.66 0.841022
Target:  5'- gCCGCGCcGCAucGUccgaagccuauUCGgagGCCCUCGCg -3'
miRNA:   3'- -GGUGCGcCGUccCA-----------AGUa--CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 6539 0.66 0.833014
Target:  5'- ---gGCGGCAGGGggcuUCGgcaggaGCgCCUCGUc -3'
miRNA:   3'- ggugCGCCGUCCCa---AGUa-----CG-GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 6636 0.66 0.841022
Target:  5'- gCCACGCGG--GGGcaCAUGUCCggaaGCu -3'
miRNA:   3'- -GGUGCGCCguCCCaaGUACGGGag--CG- -5'
24424 5' -58.2 NC_005264.1 + 11648 0.7 0.617098
Target:  5'- -aGCGCGGCAGGGcugCugucGUCgUCGCg -3'
miRNA:   3'- ggUGCGCCGUCCCaa-Gua--CGGgAGCG- -5'
24424 5' -58.2 NC_005264.1 + 11765 0.67 0.799324
Target:  5'- -gGCGCGGCGaaacGGUUgAcGCUCUCGUa -3'
miRNA:   3'- ggUGCGCCGUc---CCAAgUaCGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 12288 0.66 0.848849
Target:  5'- cCCugGCGGCAGGGcg-GUGCgCa--- -3'
miRNA:   3'- -GGugCGCCGUCCCaagUACGgGagcg -5'
24424 5' -58.2 NC_005264.1 + 12762 0.66 0.858746
Target:  5'- cCCAUGgGGCAGcgccGGgcacaacgaugcggUCAUGCCUggcauguUCGCa -3'
miRNA:   3'- -GGUGCgCCGUC----CCa-------------AGUACGGG-------AGCG- -5'
24424 5' -58.2 NC_005264.1 + 16077 0.76 0.310647
Target:  5'- gCCGCGCGGCGcuugcuguugccGGGUcCGccGCCCUCGUu -3'
miRNA:   3'- -GGUGCGCCGU------------CCCAaGUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 16103 0.81 0.172214
Target:  5'- aCUGCGCGGCcGGGUUCuuucUGCCC-CGCu -3'
miRNA:   3'- -GGUGCGCCGuCCCAAGu---ACGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 20235 0.71 0.577432
Target:  5'- cCCGCGCgugacgggugGGCAGGGguugCGgcgcGgCCUCGCg -3'
miRNA:   3'- -GGUGCG----------CCGUCCCaa--GUa---CgGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 21782 0.69 0.715953
Target:  5'- uUugGCGGCAGucguaguuGGaguagUCGUGUCCUCGa -3'
miRNA:   3'- gGugCGCCGUC--------CCa----AGUACGGGAGCg -5'
24424 5' -58.2 NC_005264.1 + 28704 0.67 0.824833
Target:  5'- cUCGCGCGGUuaugucuuauGGGGcUCuaguUGCCUgCGCc -3'
miRNA:   3'- -GGUGCGCCG----------UCCCaAGu---ACGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 29464 0.68 0.74466
Target:  5'- cCCACGCGGauuGGGGggCgGUGCag-CGCa -3'
miRNA:   3'- -GGUGCGCCg--UCCCaaG-UACGggaGCG- -5'
24424 5' -58.2 NC_005264.1 + 29715 0.66 0.848849
Target:  5'- cCCGCGCuuagagacgaucGGCAGcaGGUgcucagcuagaUCGUGCagCUCGCa -3'
miRNA:   3'- -GGUGCG------------CCGUC--CCA-----------AGUACGg-GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 31670 0.66 0.840229
Target:  5'- aCUGCGCgaGGCAGGGcucUCGgcggggcUGCCCgccaaaggUCGCg -3'
miRNA:   3'- -GGUGCG--CCGUCCCa--AGU-------ACGGG--------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.