miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24424 5' -58.2 NC_005264.1 + 60893 0.66 0.833014
Target:  5'- gCCAgGCGGgAcGGcGUaaagaucuucuUUAUGUCCUCGCc -3'
miRNA:   3'- -GGUgCGCCgU-CC-CA-----------AGUACGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 67412 0.67 0.828126
Target:  5'- uCCACGaCGGCuuuGGGUUCuUucccgccuaucugaaGCCCcUGCa -3'
miRNA:   3'- -GGUGC-GCCGu--CCCAAGuA---------------CGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 67627 0.73 0.463328
Target:  5'- gCCACGCGggcGCAGGG---GUGUCCUgCGCg -3'
miRNA:   3'- -GGUGCGC---CGUCCCaagUACGGGA-GCG- -5'
24424 5' -58.2 NC_005264.1 + 70205 0.79 0.214297
Target:  5'- gCCACGCGGCAGGGau-GUGauaCUCGCa -3'
miRNA:   3'- -GGUGCGCCGUCCCaagUACgg-GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 71069 0.66 0.855735
Target:  5'- cCUGCGCGGguGGGccccuuguaucuaUUUGUcaacagccGCCCUCGg -3'
miRNA:   3'- -GGUGCGCCguCCC-------------AAGUA--------CGGGAGCg -5'
24424 5' -58.2 NC_005264.1 + 71824 0.68 0.74466
Target:  5'- aUACGCGGCAgcauGGGUccucCGUaGCCCaUCGUu -3'
miRNA:   3'- gGUGCGCCGU----CCCAa---GUA-CGGG-AGCG- -5'
24424 5' -58.2 NC_005264.1 + 71926 0.66 0.841022
Target:  5'- -gGCGCucugcaGGCAGGaGaUCGUGCCCccaaCGCc -3'
miRNA:   3'- ggUGCG------CCGUCC-CaAGUACGGGa---GCG- -5'
24424 5' -58.2 NC_005264.1 + 75210 0.69 0.676766
Target:  5'- cCCACGCGGCuGca-UCG-GCCCUgCGCg -3'
miRNA:   3'- -GGUGCGCCGuCccaAGUaCGGGA-GCG- -5'
24424 5' -58.2 NC_005264.1 + 77316 0.76 0.324776
Target:  5'- gUCGCG-GGCGaguuGGUUCAuUGCCCUCGCg -3'
miRNA:   3'- -GGUGCgCCGUc---CCAAGU-ACGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 78605 0.67 0.824833
Target:  5'- uCCACGCGGUAGG---CAaGCUCgcggCGCc -3'
miRNA:   3'- -GGUGCGCCGUCCcaaGUaCGGGa---GCG- -5'
24424 5' -58.2 NC_005264.1 + 79302 0.75 0.354447
Target:  5'- gCCGCGU-GCGGGG-UCAUGUCgCUCGCc -3'
miRNA:   3'- -GGUGCGcCGUCCCaAGUACGG-GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 82855 0.69 0.680719
Target:  5'- uCCGCGCGGCcGGcaUCGgucucuguuugcugGCCgUCGCg -3'
miRNA:   3'- -GGUGCGCCGuCCcaAGUa-------------CGGgAGCG- -5'
24424 5' -58.2 NC_005264.1 + 83730 0.7 0.656932
Target:  5'- gUACGCGGCGGcagagAUGCCCUCuGCg -3'
miRNA:   3'- gGUGCGCCGUCccaagUACGGGAG-CG- -5'
24424 5' -58.2 NC_005264.1 + 85433 0.72 0.538353
Target:  5'- aCCGCGCGGaCAGGGagCGcuUGCCggCGUc -3'
miRNA:   3'- -GGUGCGCC-GUCCCaaGU--ACGGgaGCG- -5'
24424 5' -58.2 NC_005264.1 + 87662 0.66 0.847299
Target:  5'- aCCugGCGGCAacGGGcagcugaaaggCGUGUCCguauugUGCg -3'
miRNA:   3'- -GGugCGCCGU--CCCaa---------GUACGGGa-----GCG- -5'
24424 5' -58.2 NC_005264.1 + 89192 0.67 0.807981
Target:  5'- cCCG-GCGGCAGGuGUcCGUGCCUagGa -3'
miRNA:   3'- -GGUgCGCCGUCC-CAaGUACGGGagCg -5'
24424 5' -58.2 NC_005264.1 + 89834 0.7 0.627058
Target:  5'- gCCGCGaaac-GGGUUCAUGCCUaguUCGCa -3'
miRNA:   3'- -GGUGCgccguCCCAAGUACGGG---AGCG- -5'
24424 5' -58.2 NC_005264.1 + 90585 0.67 0.781588
Target:  5'- -aGCGCGGCAGG--UCGcGCCUUgccCGCg -3'
miRNA:   3'- ggUGCGCCGUCCcaAGUaCGGGA---GCG- -5'
24424 5' -58.2 NC_005264.1 + 91559 0.73 0.472421
Target:  5'- -gGCGCGGCGGGGggCAcgagGCUUgUCGCg -3'
miRNA:   3'- ggUGCGCCGUCCCaaGUa---CGGG-AGCG- -5'
24424 5' -58.2 NC_005264.1 + 93080 0.7 0.643995
Target:  5'- cCCGaauuCGUGGCAGGGccaguucugagaagUUCgGUGCCCgCGCu -3'
miRNA:   3'- -GGU----GCGCCGUCCC--------------AAG-UACGGGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.