miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24424 5' -58.2 NC_005264.1 + 93861 0.73 0.490871
Target:  5'- -aAUGCGGCGGGuagUCGUGCCgUgGCa -3'
miRNA:   3'- ggUGCGCCGUCCca-AGUACGGgAgCG- -5'
24424 5' -58.2 NC_005264.1 + 98870 0.68 0.725601
Target:  5'- gCAaGCGGUagcGGGGUUC-UGUcuuCCUCGCa -3'
miRNA:   3'- gGUgCGCCG---UCCCAAGuACG---GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 98930 0.66 0.856491
Target:  5'- uCCACGCGGCAcGGcggcaacuUUCAguugGagCUCGCa -3'
miRNA:   3'- -GGUGCGCCGUcCC--------AAGUa---CggGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 99677 1.12 0.001329
Target:  5'- cCCACGCGGCAGGGUUCAUGCCCUCGCc -3'
miRNA:   3'- -GGUGCGCCGUCCCAAGUACGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 99747 0.66 0.856491
Target:  5'- gCACGaGGUAGGccuUUCcgcgacgGCCCUCGCc -3'
miRNA:   3'- gGUGCgCCGUCCc--AAGua-----CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 99931 0.7 0.656932
Target:  5'- cCCGCGCGGCuaagcuGGUggacUCGUGCCaaCGUg -3'
miRNA:   3'- -GGUGCGCCGuc----CCA----AGUACGGgaGCG- -5'
24424 5' -58.2 NC_005264.1 + 107714 0.72 0.528718
Target:  5'- gCGCaCGGCGGGGUgUCGaaCCCUCGUg -3'
miRNA:   3'- gGUGcGCCGUCCCA-AGUacGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 110384 0.66 0.848849
Target:  5'- aCCGcCGaCGGC-GGGcgCAUGCUgaCGCu -3'
miRNA:   3'- -GGU-GC-GCCGuCCCaaGUACGGgaGCG- -5'
24424 5' -58.2 NC_005264.1 + 114688 0.66 0.833014
Target:  5'- gCCACGcCGaGCAGgauugcgcGGUcUCGUGCgCCUCGa -3'
miRNA:   3'- -GGUGC-GC-CGUC--------CCA-AGUACG-GGAGCg -5'
24424 5' -58.2 NC_005264.1 + 116411 0.67 0.807981
Target:  5'- gCCgACGuCGagcGCAGGGcggCGUGCagCCUCGCg -3'
miRNA:   3'- -GG-UGC-GC---CGUCCCaa-GUACG--GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 120007 0.66 0.833014
Target:  5'- -gGgGCGGCAGGuGggCcucccCCCUCGCg -3'
miRNA:   3'- ggUgCGCCGUCC-CaaGuac--GGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 120498 0.68 0.74466
Target:  5'- gUAgGUGGCGGGGgcgagGCCCUCa- -3'
miRNA:   3'- gGUgCGCCGUCCCaaguaCGGGAGcg -5'
24424 5' -58.2 NC_005264.1 + 121901 0.68 0.74466
Target:  5'- gCCGCGCGauGCGGGucuGUUCAgaagcuaGCCCgCGCc -3'
miRNA:   3'- -GGUGCGC--CGUCC---CAAGUa------CGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 122332 0.7 0.637022
Target:  5'- aCCACGUGGaaGGGGUUCGgguugGCCCa--- -3'
miRNA:   3'- -GGUGCGCCg-UCCCAAGUa----CGGGagcg -5'
24424 5' -58.2 NC_005264.1 + 122521 0.82 0.130905
Target:  5'- gCACGCGGCGGGGggCAgggGaUCCUCGCc -3'
miRNA:   3'- gGUGCGCCGUCCCaaGUa--C-GGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 122827 0.66 0.86394
Target:  5'- uCUGCGUGGCGGuccgcgaGUUCggGCCCggGCg -3'
miRNA:   3'- -GGUGCGCCGUCc------CAAGuaCGGGagCG- -5'
24424 5' -58.2 NC_005264.1 + 123495 0.71 0.548047
Target:  5'- gCCGCGCGGUugcuGGGcg-AUGUgCUCGCg -3'
miRNA:   3'- -GGUGCGCCGu---CCCaagUACGgGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 125566 0.66 0.833014
Target:  5'- ---gGCGGCAGGGggcuUCGgcaggaGCgCCUCGUc -3'
miRNA:   3'- ggugCGCCGUCCCa---AGUa-----CG-GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 125663 0.66 0.841022
Target:  5'- gCCACGCGG--GGGcaCAUGUCCggaaGCu -3'
miRNA:   3'- -GGUGCGCCguCCCaaGUACGGGag--CG- -5'
24424 5' -58.2 NC_005264.1 + 127193 0.73 0.454328
Target:  5'- -uGCGCGaagcGCAGGuacaaCGUGCCCUCGCa -3'
miRNA:   3'- ggUGCGC----CGUCCcaa--GUACGGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.