miRNA display CGI


Results 81 - 94 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24424 5' -58.2 NC_005264.1 + 136952 0.68 0.734219
Target:  5'- gCCugGgGcaucgcaaucuacGCAGGGUUCGaGCgUCUCGCg -3'
miRNA:   3'- -GGugCgC-------------CGUCCCAAGUaCG-GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 138491 0.75 0.385981
Target:  5'- gCCAgaGCGGCGGGGa-UAUGCCC-CGCc -3'
miRNA:   3'- -GGUg-CGCCGUCCCaaGUACGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 146089 0.69 0.673799
Target:  5'- cCCGCGCGGgucuugguggacuaCGcauucGGGUUCGUGCgCCaUCGUg -3'
miRNA:   3'- -GGUGCGCC--------------GU-----CCCAAGUACG-GG-AGCG- -5'
24424 5' -58.2 NC_005264.1 + 146417 0.67 0.781588
Target:  5'- gCCcCGCGGCAG---UCGagcgGCCCUUGCc -3'
miRNA:   3'- -GGuGCGCCGUCccaAGUa---CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 150697 0.68 0.76242
Target:  5'- aCGCGCgaGGCAGGGcucUCGgcggggcUGCCCgccaaaggUCGCg -3'
miRNA:   3'- gGUGCG--CCGUCCCa--AGU-------ACGGG--------AGCG- -5'
24424 5' -58.2 NC_005264.1 + 152374 0.67 0.799324
Target:  5'- aCUACauugaCGGCGGcGG-UCAcucUGCCCUCGUc -3'
miRNA:   3'- -GGUGc----GCCGUC-CCaAGU---ACGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 154826 0.67 0.790524
Target:  5'- gCCGuCGUGGCGGGcGccucugCcgGCCC-CGCa -3'
miRNA:   3'- -GGU-GCGCCGUCC-Caa----GuaCGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 155282 0.67 0.790524
Target:  5'- gCACGUGGCGgaagcGGGUagGccGUCCUCGUg -3'
miRNA:   3'- gGUGCGCCGU-----CCCAagUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 156627 0.68 0.725601
Target:  5'- gC-CGCGGCGGGGggUCAaaggacGCgUCUCGCa -3'
miRNA:   3'- gGuGCGCCGUCCCa-AGUa-----CG-GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 156690 0.7 0.656932
Target:  5'- gCACGCGauGCGcgacGGGcgCGcgGCCCUCGCc -3'
miRNA:   3'- gGUGCGC--CGU----CCCaaGUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 157315 0.66 0.86394
Target:  5'- -gACgGCGGCGacGUUCGUuacGCCUUCGCg -3'
miRNA:   3'- ggUG-CGCCGUccCAAGUA---CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 158588 0.69 0.686635
Target:  5'- cCCGCGCGGCAagccGGGacugaUCua-CCUUCGCg -3'
miRNA:   3'- -GGUGCGCCGU----CCCa----AGuacGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 159027 0.72 0.509648
Target:  5'- uCCGCGC-GCAGGGagCAccUCCUCGCa -3'
miRNA:   3'- -GGUGCGcCGUCCCaaGUacGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 160776 0.74 0.410815
Target:  5'- uUCACGCuuGCAGGGuUUCAUGCUugCUUGCa -3'
miRNA:   3'- -GGUGCGc-CGUCCC-AAGUACGG--GAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.