Results 21 - 40 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24424 | 5' | -58.2 | NC_005264.1 | + | 122332 | 0.7 | 0.637022 |
Target: 5'- aCCACGUGGaaGGGGUUCGgguugGCCCa--- -3' miRNA: 3'- -GGUGCGCCg-UCCCAAGUa----CGGGagcg -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 121901 | 0.68 | 0.74466 |
Target: 5'- gCCGCGCGauGCGGGucuGUUCAgaagcuaGCCCgCGCc -3' miRNA: 3'- -GGUGCGC--CGUCC---CAAGUa------CGGGaGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 120498 | 0.68 | 0.74466 |
Target: 5'- gUAgGUGGCGGGGgcgagGCCCUCa- -3' miRNA: 3'- gGUgCGCCGUCCCaaguaCGGGAGcg -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 120007 | 0.66 | 0.833014 |
Target: 5'- -gGgGCGGCAGGuGggCcucccCCCUCGCg -3' miRNA: 3'- ggUgCGCCGUCC-CaaGuac--GGGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 116411 | 0.67 | 0.807981 |
Target: 5'- gCCgACGuCGagcGCAGGGcggCGUGCagCCUCGCg -3' miRNA: 3'- -GG-UGC-GC---CGUCCCaa-GUACG--GGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 114688 | 0.66 | 0.833014 |
Target: 5'- gCCACGcCGaGCAGgauugcgcGGUcUCGUGCgCCUCGa -3' miRNA: 3'- -GGUGC-GC-CGUC--------CCA-AGUACG-GGAGCg -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 110384 | 0.66 | 0.848849 |
Target: 5'- aCCGcCGaCGGC-GGGcgCAUGCUgaCGCu -3' miRNA: 3'- -GGU-GC-GCCGuCCCaaGUACGGgaGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 107714 | 0.72 | 0.528718 |
Target: 5'- gCGCaCGGCGGGGUgUCGaaCCCUCGUg -3' miRNA: 3'- gGUGcGCCGUCCCA-AGUacGGGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 99931 | 0.7 | 0.656932 |
Target: 5'- cCCGCGCGGCuaagcuGGUggacUCGUGCCaaCGUg -3' miRNA: 3'- -GGUGCGCCGuc----CCA----AGUACGGgaGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 99747 | 0.66 | 0.856491 |
Target: 5'- gCACGaGGUAGGccuUUCcgcgacgGCCCUCGCc -3' miRNA: 3'- gGUGCgCCGUCCc--AAGua-----CGGGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 99677 | 1.12 | 0.001329 |
Target: 5'- cCCACGCGGCAGGGUUCAUGCCCUCGCc -3' miRNA: 3'- -GGUGCGCCGUCCCAAGUACGGGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 98930 | 0.66 | 0.856491 |
Target: 5'- uCCACGCGGCAcGGcggcaacuUUCAguugGagCUCGCa -3' miRNA: 3'- -GGUGCGCCGUcCC--------AAGUa---CggGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 98870 | 0.68 | 0.725601 |
Target: 5'- gCAaGCGGUagcGGGGUUC-UGUcuuCCUCGCa -3' miRNA: 3'- gGUgCGCCG---UCCCAAGuACG---GGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 93861 | 0.73 | 0.490871 |
Target: 5'- -aAUGCGGCGGGuagUCGUGCCgUgGCa -3' miRNA: 3'- ggUGCGCCGUCCca-AGUACGGgAgCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 93080 | 0.7 | 0.643995 |
Target: 5'- cCCGaauuCGUGGCAGGGccaguucugagaagUUCgGUGCCCgCGCu -3' miRNA: 3'- -GGU----GCGCCGUCCC--------------AAG-UACGGGaGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 91559 | 0.73 | 0.472421 |
Target: 5'- -gGCGCGGCGGGGggCAcgagGCUUgUCGCg -3' miRNA: 3'- ggUGCGCCGUCCCaaGUa---CGGG-AGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 90585 | 0.67 | 0.781588 |
Target: 5'- -aGCGCGGCAGG--UCGcGCCUUgccCGCg -3' miRNA: 3'- ggUGCGCCGUCCcaAGUaCGGGA---GCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 89834 | 0.7 | 0.627058 |
Target: 5'- gCCGCGaaac-GGGUUCAUGCCUaguUCGCa -3' miRNA: 3'- -GGUGCgccguCCCAAGUACGGG---AGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 89192 | 0.67 | 0.807981 |
Target: 5'- cCCG-GCGGCAGGuGUcCGUGCCUagGa -3' miRNA: 3'- -GGUgCGCCGUCC-CAaGUACGGGagCg -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 87662 | 0.66 | 0.847299 |
Target: 5'- aCCugGCGGCAacGGGcagcugaaaggCGUGUCCguauugUGCg -3' miRNA: 3'- -GGugCGCCGU--CCCaa---------GUACGGGa-----GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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