miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24424 5' -58.2 NC_005264.1 + 52686 0.66 0.833014
Target:  5'- cCCAaagcCGCGGCGGGuUUCGccGCCCgcccccaaaagCGCg -3'
miRNA:   3'- -GGU----GCGCCGUCCcAAGUa-CGGGa----------GCG- -5'
24424 5' -58.2 NC_005264.1 + 47851 0.71 0.548047
Target:  5'- cCCcCGUGGCGGGGgcaggGCCCaauuuUCGCg -3'
miRNA:   3'- -GGuGCGCCGUCCCaaguaCGGG-----AGCG- -5'
24424 5' -58.2 NC_005264.1 + 44465 0.73 0.481603
Target:  5'- aCCAaGCGGCAGGcGUUCGUGaCCaUCGa -3'
miRNA:   3'- -GGUgCGCCGUCC-CAAGUAC-GGgAGCg -5'
24424 5' -58.2 NC_005264.1 + 41750 0.74 0.410815
Target:  5'- uUCACGCuuGCAGGGuUUCAUGCUugCUUGCa -3'
miRNA:   3'- -GGUGCGc-CGUCCC-AAGUACGG--GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 41733 0.66 0.86394
Target:  5'- gCCAgGCGGCAGcGGcgUAUGUgCU-GCg -3'
miRNA:   3'- -GGUgCGCCGUC-CCaaGUACGgGAgCG- -5'
24424 5' -58.2 NC_005264.1 + 40738 0.71 0.557795
Target:  5'- -aACGCGGCAGaGUUCAcGgCCUCGg -3'
miRNA:   3'- ggUGCGCCGUCcCAAGUaCgGGAGCg -5'
24424 5' -58.2 NC_005264.1 + 39561 0.69 0.686635
Target:  5'- cCCGCGCGGCAagccGGGacugaUCua-CCUUCGCg -3'
miRNA:   3'- -GGUGCGCCGU----CCCa----AGuacGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 38288 0.66 0.86394
Target:  5'- -gACgGCGGCGacGUUCGUuacGCCUUCGCg -3'
miRNA:   3'- ggUG-CGCCGUccCAAGUA---CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 37664 0.7 0.656932
Target:  5'- gCACGCGauGCGcgacGGGcgCGcgGCCCUCGCc -3'
miRNA:   3'- gGUGCGC--CGU----CCCaaGUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 37600 0.68 0.725601
Target:  5'- gC-CGCGGCGGGGggUCAaaggacGCgUCUCGCa -3'
miRNA:   3'- gGuGCGCCGUCCCa-AGUa-----CG-GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 36255 0.67 0.790524
Target:  5'- gCACGUGGCGgaagcGGGUagGccGUCCUCGUg -3'
miRNA:   3'- gGUGCGCCGU-----CCCAagUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 35899 0.68 0.735173
Target:  5'- -gGCGUGGUgucGGGG-UCGcugGCUCUCGCu -3'
miRNA:   3'- ggUGCGCCG---UCCCaAGUa--CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 35800 0.67 0.790524
Target:  5'- gCCGuCGUGGCGGGcGccucugCcgGCCC-CGCa -3'
miRNA:   3'- -GGU-GCGCCGUCC-Caa----GuaCGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 34893 0.67 0.816486
Target:  5'- gCCGcCGCcuucuucgagGGCAGGGUUacugGCCCagugCGCc -3'
miRNA:   3'- -GGU-GCG----------CCGUCCCAAgua-CGGGa---GCG- -5'
24424 5' -58.2 NC_005264.1 + 31670 0.66 0.840229
Target:  5'- aCUGCGCgaGGCAGGGcucUCGgcggggcUGCCCgccaaaggUCGCg -3'
miRNA:   3'- -GGUGCG--CCGUCCCa--AGU-------ACGGG--------AGCG- -5'
24424 5' -58.2 NC_005264.1 + 29715 0.66 0.848849
Target:  5'- cCCGCGCuuagagacgaucGGCAGcaGGUgcucagcuagaUCGUGCagCUCGCa -3'
miRNA:   3'- -GGUGCG------------CCGUC--CCA-----------AGUACGg-GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 29464 0.68 0.74466
Target:  5'- cCCACGCGGauuGGGGggCgGUGCag-CGCa -3'
miRNA:   3'- -GGUGCGCCg--UCCCaaG-UACGggaGCG- -5'
24424 5' -58.2 NC_005264.1 + 28704 0.67 0.824833
Target:  5'- cUCGCGCGGUuaugucuuauGGGGcUCuaguUGCCUgCGCc -3'
miRNA:   3'- -GGUGCGCCG----------UCCCaAGu---ACGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 21782 0.69 0.715953
Target:  5'- uUugGCGGCAGucguaguuGGaguagUCGUGUCCUCGa -3'
miRNA:   3'- gGugCGCCGUC--------CCa----AGUACGGGAGCg -5'
24424 5' -58.2 NC_005264.1 + 20235 0.71 0.577432
Target:  5'- cCCGCGCgugacgggugGGCAGGGguugCGgcgcGgCCUCGCg -3'
miRNA:   3'- -GGUGCG----------CCGUCCCaa--GUa---CgGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.