miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24424 5' -58.2 NC_005264.1 + 150697 0.68 0.76242
Target:  5'- aCGCGCgaGGCAGGGcucUCGgcggggcUGCCCgccaaaggUCGCg -3'
miRNA:   3'- gGUGCG--CCGUCCCa--AGU-------ACGGG--------AGCG- -5'
24424 5' -58.2 NC_005264.1 + 83730 0.7 0.656932
Target:  5'- gUACGCGGCGGcagagAUGCCCUCuGCg -3'
miRNA:   3'- gGUGCGCCGUCccaagUACGGGAG-CG- -5'
24424 5' -58.2 NC_005264.1 + 156690 0.7 0.656932
Target:  5'- gCACGCGauGCGcgacGGGcgCGcgGCCCUCGCc -3'
miRNA:   3'- gGUGCGC--CGU----CCCaaGUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 75210 0.69 0.676766
Target:  5'- cCCACGCGGCuGca-UCG-GCCCUgCGCg -3'
miRNA:   3'- -GGUGCGCCGuCccaAGUaCGGGA-GCG- -5'
24424 5' -58.2 NC_005264.1 + 82855 0.69 0.680719
Target:  5'- uCCGCGCGGCcGGcaUCGgucucuguuugcugGCCgUCGCg -3'
miRNA:   3'- -GGUGCGCCGuCCcaAGUa-------------CGGgAGCG- -5'
24424 5' -58.2 NC_005264.1 + 158588 0.69 0.686635
Target:  5'- cCCGCGCGGCAagccGGGacugaUCua-CCUUCGCg -3'
miRNA:   3'- -GGUGCGCCGU----CCCa----AGuacGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 98870 0.68 0.725601
Target:  5'- gCAaGCGGUagcGGGGUUC-UGUcuuCCUCGCa -3'
miRNA:   3'- gGUgCGCCG---UCCCAAGuACG---GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 156627 0.68 0.725601
Target:  5'- gC-CGCGGCGGGGggUCAaaggacGCgUCUCGCa -3'
miRNA:   3'- gGuGCGCCGUCCCa-AGUa-----CG-GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 35899 0.68 0.735173
Target:  5'- -gGCGUGGUgucGGGG-UCGcugGCUCUCGCu -3'
miRNA:   3'- ggUGCGCCG---UCCCaAGUa--CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 11648 0.7 0.617098
Target:  5'- -aGCGCGGCAGGGcugCugucGUCgUCGCg -3'
miRNA:   3'- ggUGCGCCGUCCCaa-Gua--CGGgAGCG- -5'
24424 5' -58.2 NC_005264.1 + 57989 0.71 0.577432
Target:  5'- cCCGCGCGGCGGccguGGcUCAgcgGCCC-CGg -3'
miRNA:   3'- -GGUGCGCCGUC----CCaAGUa--CGGGaGCg -5'
24424 5' -58.2 NC_005264.1 + 20235 0.71 0.577432
Target:  5'- cCCGCGCgugacgggugGGCAGGGguugCGgcgcGgCCUCGCg -3'
miRNA:   3'- -GGUGCG----------CCGUCCCaa--GUa---CgGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 16103 0.81 0.172214
Target:  5'- aCUGCGCGGCcGGGUUCuuucUGCCC-CGCu -3'
miRNA:   3'- -GGUGCGCCGuCCCAAGu---ACGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 79302 0.75 0.354447
Target:  5'- gCCGCGU-GCGGGG-UCAUGUCgCUCGCc -3'
miRNA:   3'- -GGUGCGcCGUCCCaAGUACGG-GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 138491 0.75 0.385981
Target:  5'- gCCAgaGCGGCGGGGa-UAUGCCC-CGCc -3'
miRNA:   3'- -GGUg-CGCCGUCCCaaGUACGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 160776 0.74 0.410815
Target:  5'- uUCACGCuuGCAGGGuUUCAUGCUugCUUGCa -3'
miRNA:   3'- -GGUGCGc-CGUCCC-AAGUACGG--GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 59466 0.73 0.448974
Target:  5'- cCCGCGCGGCAGGcaugacgacuggCAUGUacuuCCUCGUa -3'
miRNA:   3'- -GGUGCGCCGUCCcaa---------GUACG----GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 44465 0.73 0.481603
Target:  5'- aCCAaGCGGCAGGcGUUCGUGaCCaUCGa -3'
miRNA:   3'- -GGUgCGCCGUCC-CAAGUAC-GGgAGCg -5'
24424 5' -58.2 NC_005264.1 + 47851 0.71 0.548047
Target:  5'- cCCcCGUGGCGGGGgcaggGCCCaauuuUCGCg -3'
miRNA:   3'- -GGuGCGCCGUCCCaaguaCGGG-----AGCG- -5'
24424 5' -58.2 NC_005264.1 + 40738 0.71 0.557795
Target:  5'- -aACGCGGCAGaGUUCAcGgCCUCGg -3'
miRNA:   3'- ggUGCGCCGUCcCAAGUaCgGGAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.