Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24424 | 5' | -58.2 | NC_005264.1 | + | 82855 | 0.69 | 0.680719 |
Target: 5'- uCCGCGCGGCcGGcaUCGgucucuguuugcugGCCgUCGCg -3' miRNA: 3'- -GGUGCGCCGuCCcaAGUa-------------CGGgAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 75210 | 0.69 | 0.676766 |
Target: 5'- cCCACGCGGCuGca-UCG-GCCCUgCGCg -3' miRNA: 3'- -GGUGCGCCGuCccaAGUaCGGGA-GCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 156690 | 0.7 | 0.656932 |
Target: 5'- gCACGCGauGCGcgacGGGcgCGcgGCCCUCGCc -3' miRNA: 3'- gGUGCGC--CGU----CCCaaGUa-CGGGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 83730 | 0.7 | 0.656932 |
Target: 5'- gUACGCGGCGGcagagAUGCCCUCuGCg -3' miRNA: 3'- gGUGCGCCGUCccaagUACGGGAG-CG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 114688 | 0.66 | 0.833014 |
Target: 5'- gCCACGcCGaGCAGgauugcgcGGUcUCGUGCgCCUCGa -3' miRNA: 3'- -GGUGC-GC-CGUC--------CCA-AGUACG-GGAGCg -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 60893 | 0.66 | 0.833014 |
Target: 5'- gCCAgGCGGgAcGGcGUaaagaucuucuUUAUGUCCUCGCc -3' miRNA: 3'- -GGUgCGCCgU-CC-CA-----------AGUACGGGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 6539 | 0.66 | 0.833014 |
Target: 5'- ---gGCGGCAGGGggcuUCGgcaggaGCgCCUCGUc -3' miRNA: 3'- ggugCGCCGUCCCa---AGUa-----CG-GGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 3986 | 0.67 | 0.824833 |
Target: 5'- aCCGC-CaGCAGGGcggcaCAUGCCucCUCGCc -3' miRNA: 3'- -GGUGcGcCGUCCCaa---GUACGG--GAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 28704 | 0.67 | 0.824833 |
Target: 5'- cUCGCGCGGUuaugucuuauGGGGcUCuaguUGCCUgCGCc -3' miRNA: 3'- -GGUGCGCCG----------UCCCaAGu---ACGGGaGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 89192 | 0.67 | 0.807981 |
Target: 5'- cCCG-GCGGCAGGuGUcCGUGCCUagGa -3' miRNA: 3'- -GGUgCGCCGUCC-CAaGUACGGGagCg -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 116411 | 0.67 | 0.807981 |
Target: 5'- gCCgACGuCGagcGCAGGGcggCGUGCagCCUCGCg -3' miRNA: 3'- -GG-UGC-GC---CGUCCCaa-GUACG--GGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 31670 | 0.66 | 0.840229 |
Target: 5'- aCUGCGCgaGGCAGGGcucUCGgcggggcUGCCCgccaaaggUCGCg -3' miRNA: 3'- -GGUGCG--CCGUCCCa--AGU-------ACGGG--------AGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 6636 | 0.66 | 0.841022 |
Target: 5'- gCCACGCGG--GGGcaCAUGUCCggaaGCu -3' miRNA: 3'- -GGUGCGCCguCCCaaGUACGGGag--CG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 87662 | 0.66 | 0.847299 |
Target: 5'- aCCugGCGGCAacGGGcagcugaaaggCGUGUCCguauugUGCg -3' miRNA: 3'- -GGugCGCCGU--CCCaa---------GUACGGGa-----GCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 110384 | 0.66 | 0.848849 |
Target: 5'- aCCGcCGaCGGC-GGGcgCAUGCUgaCGCu -3' miRNA: 3'- -GGU-GC-GCCGuCCCaaGUACGGgaGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 29715 | 0.66 | 0.848849 |
Target: 5'- cCCGCGCuuagagacgaucGGCAGcaGGUgcucagcuagaUCGUGCagCUCGCa -3' miRNA: 3'- -GGUGCG------------CCGUC--CCA-----------AGUACGg-GAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 99747 | 0.66 | 0.856491 |
Target: 5'- gCACGaGGUAGGccuUUCcgcgacgGCCCUCGCc -3' miRNA: 3'- gGUGCgCCGUCCc--AAGua-----CGGGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 56259 | 0.66 | 0.856491 |
Target: 5'- cCCAUGCGGUuuGcGGUcugcUCcaccGCCUUCGCg -3' miRNA: 3'- -GGUGCGCCGu-C-CCA----AGua--CGGGAGCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 3801 | 0.66 | 0.86394 |
Target: 5'- uCUGCGUGGCGGuccgcgaGUUCggGCCCggGCg -3' miRNA: 3'- -GGUGCGCCGUCc------CAAGuaCGGGagCG- -5' |
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24424 | 5' | -58.2 | NC_005264.1 | + | 99677 | 1.12 | 0.001329 |
Target: 5'- cCCACGCGGCAGGGUUCAUGCCCUCGCc -3' miRNA: 3'- -GGUGCGCCGUCCCAAGUACGGGAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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