miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24424 5' -58.2 NC_005264.1 + 85433 0.72 0.538353
Target:  5'- aCCGCGCGGaCAGGGagCGcuUGCCggCGUc -3'
miRNA:   3'- -GGUGCGCC-GUCCCaaGU--ACGGgaGCG- -5'
24424 5' -58.2 NC_005264.1 + 35800 0.67 0.790524
Target:  5'- gCCGuCGUGGCGGGcGccucugCcgGCCC-CGCa -3'
miRNA:   3'- -GGU-GCGCCGUCC-Caa----GuaCGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 36255 0.67 0.790524
Target:  5'- gCACGUGGCGgaagcGGGUagGccGUCCUCGUg -3'
miRNA:   3'- gGUGCGCCGU-----CCCAagUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 981 0.67 0.799324
Target:  5'- -gGgGCGGCAGGuGggCcuccCCCUCGCg -3'
miRNA:   3'- ggUgCGCCGUCC-CaaGuac-GGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 3801 0.66 0.86394
Target:  5'- uCUGCGUGGCGGuccgcgaGUUCggGCCCggGCg -3'
miRNA:   3'- -GGUGCGCCGUCc------CAAGuaCGGGagCG- -5'
24424 5' -58.2 NC_005264.1 + 56259 0.66 0.856491
Target:  5'- cCCAUGCGGUuuGcGGUcugcUCcaccGCCUUCGCg -3'
miRNA:   3'- -GGUGCGCCGu-C-CCA----AGua--CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 99747 0.66 0.856491
Target:  5'- gCACGaGGUAGGccuUUCcgcgacgGCCCUCGCc -3'
miRNA:   3'- gGUGCgCCGUCCc--AAGua-----CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 29715 0.66 0.848849
Target:  5'- cCCGCGCuuagagacgaucGGCAGcaGGUgcucagcuagaUCGUGCagCUCGCa -3'
miRNA:   3'- -GGUGCG------------CCGUC--CCA-----------AGUACGg-GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 110384 0.66 0.848849
Target:  5'- aCCGcCGaCGGC-GGGcgCAUGCUgaCGCu -3'
miRNA:   3'- -GGU-GC-GCCGuCCCaaGUACGGgaGCG- -5'
24424 5' -58.2 NC_005264.1 + 87662 0.66 0.847299
Target:  5'- aCCugGCGGCAacGGGcagcugaaaggCGUGUCCguauugUGCg -3'
miRNA:   3'- -GGugCGCCGU--CCCaa---------GUACGGGa-----GCG- -5'
24424 5' -58.2 NC_005264.1 + 6636 0.66 0.841022
Target:  5'- gCCACGCGG--GGGcaCAUGUCCggaaGCu -3'
miRNA:   3'- -GGUGCGCCguCCCaaGUACGGGag--CG- -5'
24424 5' -58.2 NC_005264.1 + 31670 0.66 0.840229
Target:  5'- aCUGCGCgaGGCAGGGcucUCGgcggggcUGCCCgccaaaggUCGCg -3'
miRNA:   3'- -GGUGCG--CCGUCCCa--AGU-------ACGGG--------AGCG- -5'
24424 5' -58.2 NC_005264.1 + 114688 0.66 0.833014
Target:  5'- gCCACGcCGaGCAGgauugcgcGGUcUCGUGCgCCUCGa -3'
miRNA:   3'- -GGUGC-GC-CGUC--------CCA-AGUACG-GGAGCg -5'
24424 5' -58.2 NC_005264.1 + 60893 0.66 0.833014
Target:  5'- gCCAgGCGGgAcGGcGUaaagaucuucuUUAUGUCCUCGCc -3'
miRNA:   3'- -GGUgCGCCgU-CC-CA-----------AGUACGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 6539 0.66 0.833014
Target:  5'- ---gGCGGCAGGGggcuUCGgcaggaGCgCCUCGUc -3'
miRNA:   3'- ggugCGCCGUCCCa---AGUa-----CG-GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 3986 0.67 0.824833
Target:  5'- aCCGC-CaGCAGGGcggcaCAUGCCucCUCGCc -3'
miRNA:   3'- -GGUGcGcCGUCCCaa---GUACGG--GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 28704 0.67 0.824833
Target:  5'- cUCGCGCGGUuaugucuuauGGGGcUCuaguUGCCUgCGCc -3'
miRNA:   3'- -GGUGCGCCG----------UCCCaAGu---ACGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 89192 0.67 0.807981
Target:  5'- cCCG-GCGGCAGGuGUcCGUGCCUagGa -3'
miRNA:   3'- -GGUgCGCCGUCC-CAaGUACGGGagCg -5'
24424 5' -58.2 NC_005264.1 + 116411 0.67 0.807981
Target:  5'- gCCgACGuCGagcGCAGGGcggCGUGCagCCUCGCg -3'
miRNA:   3'- -GG-UGC-GC---CGUCCCaa-GUACG--GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 152374 0.67 0.799324
Target:  5'- aCUACauugaCGGCGGcGG-UCAcucUGCCCUCGUc -3'
miRNA:   3'- -GGUGc----GCCGUC-CCaAGU---ACGGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.