miRNA display CGI


Results 81 - 94 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24424 5' -58.2 NC_005264.1 + 6539 0.66 0.833014
Target:  5'- ---gGCGGCAGGGggcuUCGgcaggaGCgCCUCGUc -3'
miRNA:   3'- ggugCGCCGUCCCa---AGUa-----CG-GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 3986 0.67 0.824833
Target:  5'- aCCGC-CaGCAGGGcggcaCAUGCCucCUCGCc -3'
miRNA:   3'- -GGUGcGcCGUCCCaa---GUACGG--GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 28704 0.67 0.824833
Target:  5'- cUCGCGCGGUuaugucuuauGGGGcUCuaguUGCCUgCGCc -3'
miRNA:   3'- -GGUGCGCCG----------UCCCaAGu---ACGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 71824 0.68 0.74466
Target:  5'- aUACGCGGCAgcauGGGUccucCGUaGCCCaUCGUu -3'
miRNA:   3'- gGUGCGCCGU----CCCAa---GUA-CGGG-AGCG- -5'
24424 5' -58.2 NC_005264.1 + 120498 0.68 0.74466
Target:  5'- gUAgGUGGCGGGGgcgagGCCCUCa- -3'
miRNA:   3'- gGUgCGCCGUCCCaaguaCGGGAGcg -5'
24424 5' -58.2 NC_005264.1 + 121901 0.68 0.74466
Target:  5'- gCCGCGCGauGCGGGucuGUUCAgaagcuaGCCCgCGCc -3'
miRNA:   3'- -GGUGCGC--CGUCC---CAAGUa------CGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 146417 0.67 0.781588
Target:  5'- gCCcCGCGGCAG---UCGagcgGCCCUUGCc -3'
miRNA:   3'- -GGuGCGCCGUCccaAGUa---CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 35800 0.67 0.790524
Target:  5'- gCCGuCGUGGCGGGcGccucugCcgGCCC-CGCa -3'
miRNA:   3'- -GGU-GCGCCGUCC-Caa----GuaCGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 36255 0.67 0.790524
Target:  5'- gCACGUGGCGgaagcGGGUagGccGUCCUCGUg -3'
miRNA:   3'- gGUGCGCCGU-----CCCAagUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 981 0.67 0.799324
Target:  5'- -gGgGCGGCAGGuGggCcuccCCCUCGCg -3'
miRNA:   3'- ggUgCGCCGUCC-CaaGuac-GGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 152374 0.67 0.799324
Target:  5'- aCUACauugaCGGCGGcGG-UCAcucUGCCCUCGUc -3'
miRNA:   3'- -GGUGc----GCCGUC-CCaAGU---ACGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 116411 0.67 0.807981
Target:  5'- gCCgACGuCGagcGCAGGGcggCGUGCagCCUCGCg -3'
miRNA:   3'- -GG-UGC-GC---CGUCCCaa-GUACG--GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 89192 0.67 0.807981
Target:  5'- cCCG-GCGGCAGGuGUcCGUGCCUagGa -3'
miRNA:   3'- -GGUgCGCCGUCC-CAaGUACGGGagCg -5'
24424 5' -58.2 NC_005264.1 + 38288 0.66 0.86394
Target:  5'- -gACgGCGGCGacGUUCGUuacGCCUUCGCg -3'
miRNA:   3'- ggUG-CGCCGUccCAAGUA---CGGGAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.