miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24424 5' -58.2 NC_005264.1 + 120498 0.68 0.74466
Target:  5'- gUAgGUGGCGGGGgcgagGCCCUCa- -3'
miRNA:   3'- gGUgCGCCGUCCCaaguaCGGGAGcg -5'
24424 5' -58.2 NC_005264.1 + 35800 0.67 0.790524
Target:  5'- gCCGuCGUGGCGGGcGccucugCcgGCCC-CGCa -3'
miRNA:   3'- -GGU-GCGCCGUCC-Caa----GuaCGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 60893 0.66 0.833014
Target:  5'- gCCAgGCGGgAcGGcGUaaagaucuucuUUAUGUCCUCGCc -3'
miRNA:   3'- -GGUgCGCCgU-CC-CA-----------AGUACGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 99747 0.66 0.856491
Target:  5'- gCACGaGGUAGGccuUUCcgcgacgGCCCUCGCc -3'
miRNA:   3'- gGUGCgCCGUCCc--AAGua-----CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 89834 0.7 0.627058
Target:  5'- gCCGCGaaac-GGGUUCAUGCCUaguUCGCa -3'
miRNA:   3'- -GGUGCgccguCCCAAGUACGGG---AGCG- -5'
24424 5' -58.2 NC_005264.1 + 21782 0.69 0.715953
Target:  5'- uUugGCGGCAGucguaguuGGaguagUCGUGUCCUCGa -3'
miRNA:   3'- gGugCGCCGUC--------CCa----AGUACGGGAGCg -5'
24424 5' -58.2 NC_005264.1 + 981 0.67 0.799324
Target:  5'- -gGgGCGGCAGGuGggCcuccCCCUCGCg -3'
miRNA:   3'- ggUgCGCCGUCC-CaaGuac-GGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 56259 0.66 0.856491
Target:  5'- cCCAUGCGGUuuGcGGUcugcUCcaccGCCUUCGCg -3'
miRNA:   3'- -GGUGCGCCGu-C-CCA----AGua--CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 37600 0.68 0.725601
Target:  5'- gC-CGCGGCGGGGggUCAaaggacGCgUCUCGCa -3'
miRNA:   3'- gGuGCGCCGUCCCa-AGUa-----CG-GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 3801 0.66 0.86394
Target:  5'- uCUGCGUGGCGGuccgcgaGUUCggGCCCggGCg -3'
miRNA:   3'- -GGUGCGCCGUCc------CAAGuaCGGGagCG- -5'
24424 5' -58.2 NC_005264.1 + 36255 0.67 0.790524
Target:  5'- gCACGUGGCGgaagcGGGUagGccGUCCUCGUg -3'
miRNA:   3'- gGUGCGCCGU-----CCCAagUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 71824 0.68 0.74466
Target:  5'- aUACGCGGCAgcauGGGUccucCGUaGCCCaUCGUu -3'
miRNA:   3'- gGUGCGCCGU----CCCAa---GUA-CGGG-AGCG- -5'
24424 5' -58.2 NC_005264.1 + 89192 0.67 0.807981
Target:  5'- cCCG-GCGGCAGGuGUcCGUGCCUagGa -3'
miRNA:   3'- -GGUgCGCCGUCC-CAaGUACGGGagCg -5'
24424 5' -58.2 NC_005264.1 + 6539 0.66 0.833014
Target:  5'- ---gGCGGCAGGGggcuUCGgcaggaGCgCCUCGUc -3'
miRNA:   3'- ggugCGCCGUCCCa---AGUa-----CG-GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 6636 0.66 0.841022
Target:  5'- gCCACGCGG--GGGcaCAUGUCCggaaGCu -3'
miRNA:   3'- -GGUGCGCCguCCCaaGUACGGGag--CG- -5'
24424 5' -58.2 NC_005264.1 + 29715 0.66 0.848849
Target:  5'- cCCGCGCuuagagacgaucGGCAGcaGGUgcucagcuagaUCGUGCagCUCGCa -3'
miRNA:   3'- -GGUGCG------------CCGUC--CCA-----------AGUACGg-GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 53923 0.72 0.519148
Target:  5'- gCCACGCGGCucGGGUUCc--UCgUCGCu -3'
miRNA:   3'- -GGUGCGCCGu-CCCAAGuacGGgAGCG- -5'
24424 5' -58.2 NC_005264.1 + 123495 0.71 0.548047
Target:  5'- gCCGCGCGGUugcuGGGcg-AUGUgCUCGCg -3'
miRNA:   3'- -GGUGCGCCGu---CCCaagUACGgGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 37664 0.7 0.656932
Target:  5'- gCACGCGauGCGcgacGGGcgCGcgGCCCUCGCc -3'
miRNA:   3'- gGUGCGC--CGU----CCCaaGUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 39561 0.69 0.686635
Target:  5'- cCCGCGCGGCAagccGGGacugaUCua-CCUUCGCg -3'
miRNA:   3'- -GGUGCGCCGU----CCCa----AGuacGGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.