miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24424 5' -58.2 NC_005264.1 + 16077 0.76 0.310647
Target:  5'- gCCGCGCGGCGcuugcuguugccGGGUcCGccGCCCUCGUu -3'
miRNA:   3'- -GGUGCGCCGU------------CCCAaGUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 36255 0.67 0.790524
Target:  5'- gCACGUGGCGgaagcGGGUagGccGUCCUCGUg -3'
miRNA:   3'- gGUGCGCCGU-----CCCAagUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 29464 0.68 0.74466
Target:  5'- cCCACGCGGauuGGGGggCgGUGCag-CGCa -3'
miRNA:   3'- -GGUGCGCCg--UCCCaaG-UACGggaGCG- -5'
24424 5' -58.2 NC_005264.1 + 39561 0.69 0.686635
Target:  5'- cCCGCGCGGCAagccGGGacugaUCua-CCUUCGCg -3'
miRNA:   3'- -GGUGCGCCGU----CCCa----AGuacGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 37664 0.7 0.656932
Target:  5'- gCACGCGauGCGcgacGGGcgCGcgGCCCUCGCc -3'
miRNA:   3'- gGUGCGC--CGU----CCCaaGUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 99677 1.12 0.001329
Target:  5'- cCCACGCGGCAGGGUUCAUGCCCUCGCc -3'
miRNA:   3'- -GGUGCGCCGUCCCAAGUACGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 77316 0.76 0.324776
Target:  5'- gUCGCG-GGCGaguuGGUUCAuUGCCCUCGCg -3'
miRNA:   3'- -GGUGCgCCGUc---CCAAGU-ACGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 127193 0.73 0.454328
Target:  5'- -uGCGCGaagcGCAGGuacaaCGUGCCCUCGCa -3'
miRNA:   3'- ggUGCGC----CGUCCcaa--GUACGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 159027 0.72 0.509648
Target:  5'- uCCGCGC-GCAGGGagCAccUCCUCGCa -3'
miRNA:   3'- -GGUGCGcCGUCCCaaGUacGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 85433 0.72 0.538353
Target:  5'- aCCGCGCGGaCAGGGagCGcuUGCCggCGUc -3'
miRNA:   3'- -GGUGCGCC-GUCCCaaGU--ACGGgaGCG- -5'
24424 5' -58.2 NC_005264.1 + 1004 0.67 0.805399
Target:  5'- cCCGCGCccguguggugggggGGCAGGGgccgUUcUGUauUCUCGCg -3'
miRNA:   3'- -GGUGCG--------------CCGUCCCa---AGuACG--GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 34893 0.67 0.816486
Target:  5'- gCCGcCGCcuucuucgagGGCAGGGUUacugGCCCagugCGCc -3'
miRNA:   3'- -GGU-GCG----------CCGUCCCAAgua-CGGGa---GCG- -5'
24424 5' -58.2 NC_005264.1 + 78605 0.67 0.824833
Target:  5'- uCCACGCGGUAGG---CAaGCUCgcggCGCc -3'
miRNA:   3'- -GGUGCGCCGUCCcaaGUaCGGGa---GCG- -5'
24424 5' -58.2 NC_005264.1 + 11765 0.67 0.799324
Target:  5'- -gGCGCGGCGaaacGGUUgAcGCUCUCGUa -3'
miRNA:   3'- ggUGCGCCGUc---CCAAgUaCGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 155282 0.67 0.790524
Target:  5'- gCACGUGGCGgaagcGGGUagGccGUCCUCGUg -3'
miRNA:   3'- gGUGCGCCGU-----CCCAagUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 44465 0.73 0.481603
Target:  5'- aCCAaGCGGCAGGcGUUCGUGaCCaUCGa -3'
miRNA:   3'- -GGUgCGCCGUCC-CAAGUAC-GGgAGCg -5'
24424 5' -58.2 NC_005264.1 + 120007 0.66 0.833014
Target:  5'- -gGgGCGGCAGGuGggCcucccCCCUCGCg -3'
miRNA:   3'- ggUgCGCCGUCC-CaaGuac--GGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 83730 0.7 0.656932
Target:  5'- gUACGCGGCGGcagagAUGCCCUCuGCg -3'
miRNA:   3'- gGUGCGCCGUCccaagUACGGGAG-CG- -5'
24424 5' -58.2 NC_005264.1 + 156690 0.7 0.656932
Target:  5'- gCACGCGauGCGcgacGGGcgCGcgGCCCUCGCc -3'
miRNA:   3'- gGUGCGC--CGU----CCCaaGUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 75210 0.69 0.676766
Target:  5'- cCCACGCGGCuGca-UCG-GCCCUgCGCg -3'
miRNA:   3'- -GGUGCGCCGuCccaAGUaCGGGA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.