miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24424 5' -58.2 NC_005264.1 + 11648 0.7 0.617098
Target:  5'- -aGCGCGGCAGGGcugCugucGUCgUCGCg -3'
miRNA:   3'- ggUGCGCCGUCCCaa-Gua--CGGgAGCG- -5'
24424 5' -58.2 NC_005264.1 + 20235 0.71 0.577432
Target:  5'- cCCGCGCgugacgggugGGCAGGGguugCGgcgcGgCCUCGCg -3'
miRNA:   3'- -GGUGCG----------CCGUCCCaa--GUa---CgGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 44465 0.73 0.481603
Target:  5'- aCCAaGCGGCAGGcGUUCGUGaCCaUCGa -3'
miRNA:   3'- -GGUgCGCCGUCC-CAAGUAC-GGgAGCg -5'
24424 5' -58.2 NC_005264.1 + 59466 0.73 0.448974
Target:  5'- cCCGCGCGGCAGGcaugacgacuggCAUGUacuuCCUCGUa -3'
miRNA:   3'- -GGUGCGCCGUCCcaa---------GUACG----GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 160776 0.74 0.410815
Target:  5'- uUCACGCuuGCAGGGuUUCAUGCUugCUUGCa -3'
miRNA:   3'- -GGUGCGc-CGUCCC-AAGUACGG--GAGCG- -5'
24424 5' -58.2 NC_005264.1 + 154826 0.67 0.790524
Target:  5'- gCCGuCGUGGCGGGcGccucugCcgGCCC-CGCa -3'
miRNA:   3'- -GGU-GCGCCGUCC-Caa----GuaCGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 155282 0.67 0.790524
Target:  5'- gCACGUGGCGgaagcGGGUagGccGUCCUCGUg -3'
miRNA:   3'- gGUGCGCCGU-----CCCAagUa-CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 157315 0.66 0.86394
Target:  5'- -gACgGCGGCGacGUUCGUuacGCCUUCGCg -3'
miRNA:   3'- ggUG-CGCCGUccCAAGUA---CGGGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 57480 0.66 0.86394
Target:  5'- uCCugGCGGCGGcGGcgaagAUGCUggCGCg -3'
miRNA:   3'- -GGugCGCCGUC-CCaag--UACGGgaGCG- -5'
24424 5' -58.2 NC_005264.1 + 122827 0.66 0.86394
Target:  5'- uCUGCGUGGCGGuccgcgaGUUCggGCCCggGCg -3'
miRNA:   3'- -GGUGCGCCGUCc------CAAGuaCGGGagCG- -5'
24424 5' -58.2 NC_005264.1 + 41733 0.66 0.86394
Target:  5'- gCCAgGCGGCAGcGGcgUAUGUgCU-GCg -3'
miRNA:   3'- -GGUgCGCCGUC-CCaaGUACGgGAgCG- -5'
24424 5' -58.2 NC_005264.1 + 12762 0.66 0.858746
Target:  5'- cCCAUGgGGCAGcgccGGgcacaacgaugcggUCAUGCCUggcauguUCGCa -3'
miRNA:   3'- -GGUGCgCCGUC----CCa-------------AGUACGGG-------AGCG- -5'
24424 5' -58.2 NC_005264.1 + 98930 0.66 0.856491
Target:  5'- uCCACGCGGCAcGGcggcaacuUUCAguugGagCUCGCa -3'
miRNA:   3'- -GGUGCGCCGUcCC--------AAGUa---CggGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 71069 0.66 0.855735
Target:  5'- cCUGCGCGGguGGGccccuuguaucuaUUUGUcaacagccGCCCUCGg -3'
miRNA:   3'- -GGUGCGCCguCCC-------------AAGUA--------CGGGAGCg -5'
24424 5' -58.2 NC_005264.1 + 12288 0.66 0.848849
Target:  5'- cCCugGCGGCAGGGcg-GUGCgCa--- -3'
miRNA:   3'- -GGugCGCCGUCCCaagUACGgGagcg -5'
24424 5' -58.2 NC_005264.1 + 67412 0.67 0.828126
Target:  5'- uCCACGaCGGCuuuGGGUUCuUucccgccuaucugaaGCCCcUGCa -3'
miRNA:   3'- -GGUGC-GCCGu--CCCAAGuA---------------CGGGaGCG- -5'
24424 5' -58.2 NC_005264.1 + 78605 0.67 0.824833
Target:  5'- uCCACGCGGUAGG---CAaGCUCgcggCGCc -3'
miRNA:   3'- -GGUGCGCCGUCCcaaGUaCGGGa---GCG- -5'
24424 5' -58.2 NC_005264.1 + 34893 0.67 0.816486
Target:  5'- gCCGcCGCcuucuucgagGGCAGGGUUacugGCCCagugCGCc -3'
miRNA:   3'- -GGU-GCG----------CCGUCCCAAgua-CGGGa---GCG- -5'
24424 5' -58.2 NC_005264.1 + 1004 0.67 0.805399
Target:  5'- cCCGCGCccguguggugggggGGCAGGGgccgUUcUGUauUCUCGCg -3'
miRNA:   3'- -GGUGCG--------------CCGUCCCa---AGuACG--GGAGCG- -5'
24424 5' -58.2 NC_005264.1 + 11765 0.67 0.799324
Target:  5'- -gGCGCGGCGaaacGGUUgAcGCUCUCGUa -3'
miRNA:   3'- ggUGCGCCGUc---CCAAgUaCGGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.