miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24425 3' -58.8 NC_005264.1 + 13406 0.66 0.791532
Target:  5'- --cGCaGCUCUCcgcacCGGCGCGCgaccGCCg -3'
miRNA:   3'- gucCGcUGAGAGa----GCCGCGCGaa--CGG- -5'
24425 3' -58.8 NC_005264.1 + 159511 0.66 0.790643
Target:  5'- uGGcGCGACUaCUCUcgcuccgcuugcaCGGCGCGCgaucCCg -3'
miRNA:   3'- gUC-CGCUGA-GAGA-------------GCCGCGCGaac-GG- -5'
24425 3' -58.8 NC_005264.1 + 52168 0.66 0.790643
Target:  5'- uCAGGUag--CUCUCGGCGCuccugauaaauguGCUgaggGCCg -3'
miRNA:   3'- -GUCCGcugaGAGAGCCGCG-------------CGAa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 101388 0.67 0.782581
Target:  5'- -cGGCG-CUCgagcaaCUCGGCGCcgaggaGCggGCCg -3'
miRNA:   3'- guCCGCuGAGa-----GAGCCGCG------CGaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 20262 0.67 0.781678
Target:  5'- gCGGcGCGGC-CUCgcggaggggaccgUCuGCGCGCUUGCg -3'
miRNA:   3'- -GUC-CGCUGaGAG-------------AGcCGCGCGAACGg -5'
24425 3' -58.8 NC_005264.1 + 59708 0.67 0.7735
Target:  5'- -cGGCGucgguuaUCUC-CGGCGCGCaugGCUc -3'
miRNA:   3'- guCCGCug-----AGAGaGCCGCGCGaa-CGG- -5'
24425 3' -58.8 NC_005264.1 + 42141 0.67 0.7735
Target:  5'- -cGcCGGCUUUgUCGGCGCGag-GCCu -3'
miRNA:   3'- guCcGCUGAGAgAGCCGCGCgaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 58288 0.67 0.764299
Target:  5'- aCAGaGCuuCUucCUCUgaUGGCGCGCUUcGCCg -3'
miRNA:   3'- -GUC-CGcuGA--GAGA--GCCGCGCGAA-CGG- -5'
24425 3' -58.8 NC_005264.1 + 66592 0.67 0.764299
Target:  5'- aCAGGCu-CUCgCUgGGCuGCGCcgcgUUGCCg -3'
miRNA:   3'- -GUCCGcuGAGaGAgCCG-CGCG----AACGG- -5'
24425 3' -58.8 NC_005264.1 + 119760 0.67 0.764299
Target:  5'- aAGGCGGCUCUggUCGGCGUagacgaauuCUUGaCCg -3'
miRNA:   3'- gUCCGCUGAGAg-AGCCGCGc--------GAAC-GG- -5'
24425 3' -58.8 NC_005264.1 + 104557 0.67 0.754986
Target:  5'- --aGCG-UUUUCUCGGUGCGCgcaagcGCCa -3'
miRNA:   3'- gucCGCuGAGAGAGCCGCGCGaa----CGG- -5'
24425 3' -58.8 NC_005264.1 + 73363 0.67 0.754986
Target:  5'- -uGGuCGACgcgcggugCUUUUGGCGCgGCUcUGCCa -3'
miRNA:   3'- guCC-GCUGa-------GAGAGCCGCG-CGA-ACGG- -5'
24425 3' -58.8 NC_005264.1 + 31352 0.67 0.74557
Target:  5'- cCAGGUG-CUCg---GGCaCGCUUGCCg -3'
miRNA:   3'- -GUCCGCuGAGagagCCGcGCGAACGG- -5'
24425 3' -58.8 NC_005264.1 + 79102 0.67 0.736058
Target:  5'- cCGGGgaGACgcuuaagCUCGGCacggcggcguGCGCUUGCCc -3'
miRNA:   3'- -GUCCg-CUGaga----GAGCCG----------CGCGAACGG- -5'
24425 3' -58.8 NC_005264.1 + 67728 0.68 0.726461
Target:  5'- gGGGCGGCUucggggcaaaggCUCUCagcgaaaucagGGCGuCGCUUaucGCCa -3'
miRNA:   3'- gUCCGCUGA------------GAGAG-----------CCGC-GCGAA---CGG- -5'
24425 3' -58.8 NC_005264.1 + 62993 0.68 0.726461
Target:  5'- -uGGCgGACUC-CaaGGCGUGCUUGgCg -3'
miRNA:   3'- guCCG-CUGAGaGagCCGCGCGAACgG- -5'
24425 3' -58.8 NC_005264.1 + 69402 0.68 0.726461
Target:  5'- uGGGCGGgUa----GGCGCGCcUGCCg -3'
miRNA:   3'- gUCCGCUgAgagagCCGCGCGaACGG- -5'
24425 3' -58.8 NC_005264.1 + 125261 0.68 0.706063
Target:  5'- uCGGcGCGACUUguUCUucgcccuccgcggCGGCGCGCU-GUCg -3'
miRNA:   3'- -GUC-CGCUGAG--AGA-------------GCCGCGCGAaCGG- -5'
24425 3' -58.8 NC_005264.1 + 136706 0.68 0.704106
Target:  5'- uGGGCucgccAUUCUCUCGGCccgcgccacgagccGCGCggugGCCa -3'
miRNA:   3'- gUCCGc----UGAGAGAGCCG--------------CGCGaa--CGG- -5'
24425 3' -58.8 NC_005264.1 + 150703 0.68 0.697236
Target:  5'- gAGGCagGGCUCUCggCGGgGCuGCccGCCa -3'
miRNA:   3'- gUCCG--CUGAGAGa-GCCgCG-CGaaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.