miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24425 5' -55.7 NC_005264.1 + 86457 0.66 0.918257
Target:  5'- aUGGAGacGCUGCA-GGAGcu-GAGCCa -3'
miRNA:   3'- cACCUC--CGAUGUcCCUCaauCUCGGc -5'
24425 5' -55.7 NC_005264.1 + 148181 0.66 0.906322
Target:  5'- -gGGAGGgaGCGGGuGAGguuaUUGGcGGCCGu -3'
miRNA:   3'- caCCUCCgaUGUCC-CUC----AAUC-UCGGC- -5'
24425 5' -55.7 NC_005264.1 + 109761 0.66 0.899998
Target:  5'- -cGGAGGC-ACAGGGGGcuaaacGGucugcuGCCGa -3'
miRNA:   3'- caCCUCCGaUGUCCCUCaa----UCu-----CGGC- -5'
24425 5' -55.7 NC_005264.1 + 44064 0.67 0.87963
Target:  5'- uGUGGAGGaucguUACAGGuGAGUacuaacggGGAGCUu -3'
miRNA:   3'- -CACCUCCg----AUGUCC-CUCAa-------UCUCGGc -5'
24425 5' -55.7 NC_005264.1 + 121721 0.67 0.872389
Target:  5'- cGUGGuGGCggaGgAGGGAGUccagaUAG-GCCGc -3'
miRNA:   3'- -CACCuCCGa--UgUCCCUCA-----AUCuCGGC- -5'
24425 5' -55.7 NC_005264.1 + 2694 0.67 0.872389
Target:  5'- cGUGGuGGCggaGgAGGGAGUccagaUAG-GCCGc -3'
miRNA:   3'- -CACCuCCGa--UgUCCCUCA-----AUCuCGGC- -5'
24425 5' -55.7 NC_005264.1 + 47273 0.67 0.85726
Target:  5'- -gGGGGGCUGCAGGcuguGGUguggAGAuuGCCa -3'
miRNA:   3'- caCCUCCGAUGUCCc---UCAa---UCU--CGGc -5'
24425 5' -55.7 NC_005264.1 + 49615 0.68 0.841308
Target:  5'- -gGGGGGCgcuCGGuGGGGUaccagGGGGCCa -3'
miRNA:   3'- caCCUCCGau-GUC-CCUCAa----UCUCGGc -5'
24425 5' -55.7 NC_005264.1 + 19198 0.68 0.83304
Target:  5'- -aGGuucGGCUugcccaugguguGCAGGGAGc-AGGGCCGg -3'
miRNA:   3'- caCCu--CCGA------------UGUCCCUCaaUCUCGGC- -5'
24425 5' -55.7 NC_005264.1 + 1573 0.68 0.815957
Target:  5'- uUGG-GGCUGCAGGGAccucucggUGGGGCa- -3'
miRNA:   3'- cACCuCCGAUGUCCCUca------AUCUCGgc -5'
24425 5' -55.7 NC_005264.1 + 16397 0.68 0.815957
Target:  5'- cGUGGcgcauuGGCacuCGGGGAGgcaAGGGCCGc -3'
miRNA:   3'- -CACCu-----CCGau-GUCCCUCaa-UCUCGGC- -5'
24425 5' -55.7 NC_005264.1 + 162248 0.68 0.815957
Target:  5'- -gGGGGGCUACGGcGGGGcUGGcgGGCgGa -3'
miRNA:   3'- caCCUCCGAUGUC-CCUCaAUC--UCGgC- -5'
24425 5' -55.7 NC_005264.1 + 43221 0.68 0.815957
Target:  5'- -gGGGGGCUACGGcGGGGcUGGcgGGCgGa -3'
miRNA:   3'- caCCUCCGAUGUC-CCUCaAUC--UCGgC- -5'
24425 5' -55.7 NC_005264.1 + 21550 0.68 0.807159
Target:  5'- cGUGGGcgacGGC-ACuGGGGGUUGGGGCa- -3'
miRNA:   3'- -CACCU----CCGaUGuCCCUCAAUCUCGgc -5'
24425 5' -55.7 NC_005264.1 + 17278 0.69 0.789089
Target:  5'- -cGGAGGCgACGGGGcgg-AGGGCUGc -3'
miRNA:   3'- caCCUCCGaUGUCCCucaaUCUCGGC- -5'
24425 5' -55.7 NC_005264.1 + 3637 0.69 0.779835
Target:  5'- gGUGGGGGUUuCuGGGAGgcgguuuGAGCUGg -3'
miRNA:   3'- -CACCUCCGAuGuCCCUCaau----CUCGGC- -5'
24425 5' -55.7 NC_005264.1 + 149447 0.73 0.52656
Target:  5'- -cGGAGaGCUGCGGcGGAGgaggucucgggGGAGCCGc -3'
miRNA:   3'- caCCUC-CGAUGUC-CCUCaa---------UCUCGGC- -5'
24425 5' -55.7 NC_005264.1 + 30420 0.73 0.52656
Target:  5'- -cGGAGaGCUGCGGcGGAGgaggucucgggGGAGCCGc -3'
miRNA:   3'- caCCUC-CGAUGUC-CCUCaa---------UCUCGGC- -5'
24425 5' -55.7 NC_005264.1 + 98388 1.08 0.003391
Target:  5'- cGUGGAGGCUACAGGGAGUUAGAGCCGc -3'
miRNA:   3'- -CACCUCCGAUGUCCCUCAAUCUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.