miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24426 3' -57.3 NC_005264.1 + 98140 1.06 0.00336
Target:  5'- aAAACCUGAUUCGGGCGAGCACGGCCUg -3'
miRNA:   3'- -UUUGGACUAAGCCCGCUCGUGCCGGA- -5'
24426 3' -57.3 NC_005264.1 + 124135 0.73 0.430233
Target:  5'- -cGCCUGG---GGGCGAGCugGGaCCUa -3'
miRNA:   3'- uuUGGACUaagCCCGCUCGugCC-GGA- -5'
24426 3' -57.3 NC_005264.1 + 5108 0.73 0.430233
Target:  5'- -cGCCUGG---GGGCGAGCugGGaCCUa -3'
miRNA:   3'- uuUGGACUaagCCCGCUCGugCC-GGA- -5'
24426 3' -57.3 NC_005264.1 + 148687 0.72 0.495135
Target:  5'- uAGCCUGGUU--GGCGAGCugGGCa- -3'
miRNA:   3'- uUUGGACUAAgcCCGCUCGugCCGga -5'
24426 3' -57.3 NC_005264.1 + 120321 0.7 0.614927
Target:  5'- gGGACUaggUGAgUCGGGCGAuGUACGGCg- -3'
miRNA:   3'- -UUUGG---ACUaAGCCCGCU-CGUGCCGga -5'
24426 3' -57.3 NC_005264.1 + 1294 0.7 0.614927
Target:  5'- gGGACUaggUGAgUCGGGCGAuGUACGGCg- -3'
miRNA:   3'- -UUUGG---ACUaAGCCCGCU-CGUGCCGga -5'
24426 3' -57.3 NC_005264.1 + 142842 0.7 0.614927
Target:  5'- cAACCgGAUgCGaGCGAGCGCGGUCg -3'
miRNA:   3'- uUUGGaCUAaGCcCGCUCGUGCCGGa -5'
24426 3' -57.3 NC_005264.1 + 94591 0.69 0.676216
Target:  5'- cAGGCCgcccgCGGcGCGGGCAUGGCUUg -3'
miRNA:   3'- -UUUGGacuaaGCC-CGCUCGUGCCGGA- -5'
24426 3' -57.3 NC_005264.1 + 127918 0.69 0.686354
Target:  5'- --uCCUGAggCGGGCGccaCugGGCCa -3'
miRNA:   3'- uuuGGACUaaGCCCGCuc-GugCCGGa -5'
24426 3' -57.3 NC_005264.1 + 20901 0.69 0.696447
Target:  5'- gAGGCCUGGcUCGGGCGGcccaguaauuGCAgGGaCCa -3'
miRNA:   3'- -UUUGGACUaAGCCCGCU----------CGUgCC-GGa -5'
24426 3' -57.3 NC_005264.1 + 62921 0.69 0.696447
Target:  5'- uAGCCgcg--CGGGCuuGCGCGGCCg -3'
miRNA:   3'- uUUGGacuaaGCCCGcuCGUGCCGGa -5'
24426 3' -57.3 NC_005264.1 + 126297 0.69 0.696447
Target:  5'- -uGCCgcuUUCGGGC--GCGCGGCCg -3'
miRNA:   3'- uuUGGacuAAGCCCGcuCGUGCCGGa -5'
24426 3' -57.3 NC_005264.1 + 35261 0.69 0.704483
Target:  5'- aAGACCgaaaacacUGGcGCGGGCGCGGCCg -3'
miRNA:   3'- -UUUGGacuaa---GCC-CGCUCGUGCCGGa -5'
24426 3' -57.3 NC_005264.1 + 118884 0.68 0.726367
Target:  5'- -cACC--GUUCGGGCG-GUAgGGCCUg -3'
miRNA:   3'- uuUGGacUAAGCCCGCuCGUgCCGGA- -5'
24426 3' -57.3 NC_005264.1 + 116282 0.68 0.745922
Target:  5'- gAAGCCgUGGcgCGGGCG-GCuACGGCUg -3'
miRNA:   3'- -UUUGG-ACUaaGCCCGCuCG-UGCCGGa -5'
24426 3' -57.3 NC_005264.1 + 122824 0.68 0.759378
Target:  5'- cGAUCUGcguggcgguccgcgaGUUCGGGCccGGGCGgGGCCg -3'
miRNA:   3'- uUUGGAC---------------UAAGCCCG--CUCGUgCCGGa -5'
24426 3' -57.3 NC_005264.1 + 3798 0.68 0.759378
Target:  5'- cGAUCUGcguggcgguccgcgaGUUCGGGCccGGGCGgGGCCg -3'
miRNA:   3'- uUUGGAC---------------UAAGCCCG--CUCGUgCCGGa -5'
24426 3' -57.3 NC_005264.1 + 33404 0.67 0.792906
Target:  5'- cGACCgcggUGAUgUUGGGCGAGUACGcCCg -3'
miRNA:   3'- uUUGG----ACUA-AGCCCGCUCGUGCcGGa -5'
24426 3' -57.3 NC_005264.1 + 55560 0.67 0.801904
Target:  5'- ---aCUGGag-GGGgGAGCGCGGCCc -3'
miRNA:   3'- uuugGACUaagCCCgCUCGUGCCGGa -5'
24426 3' -57.3 NC_005264.1 + 42522 0.67 0.819429
Target:  5'- uGGCCUGAUgugUGGcGUGGGCGCaGCUUc -3'
miRNA:   3'- uUUGGACUAa--GCC-CGCUCGUGcCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.