Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24426 | 3' | -57.3 | NC_005264.1 | + | 113192 | 0.66 | 0.860133 |
Target: 5'- gGAACCcGAcgucCGGGuCGAGCACcuuGGCCc -3' miRNA: 3'- -UUUGGaCUaa--GCCC-GCUCGUG---CCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 141752 | 0.66 | 0.860133 |
Target: 5'- cAGGCCc---UCGGagGCGAGCACGGCa- -3' miRNA: 3'- -UUUGGacuaAGCC--CGCUCGUGCCGga -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 118420 | 0.66 | 0.859367 |
Target: 5'- uAGGCCUcggGAUUauGGUGAGCAaguacauCGGCCa -3' miRNA: 3'- -UUUGGA---CUAAgcCCGCUCGU-------GCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 114097 | 0.66 | 0.852378 |
Target: 5'- gGAGCUUGuagUCGGGCcAGU-CGGCCc -3' miRNA: 3'- -UUUGGACua-AGCCCGcUCGuGCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 47194 | 0.66 | 0.852378 |
Target: 5'- cAAGCCUGGgaUGaGCGGGgcCACGGCCg -3' miRNA: 3'- -UUUGGACUaaGCcCGCUC--GUGCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 31519 | 0.66 | 0.844422 |
Target: 5'- --uCCaGGcUCGGGCGGGgAgGGCCg -3' miRNA: 3'- uuuGGaCUaAGCCCGCUCgUgCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 150546 | 0.66 | 0.844422 |
Target: 5'- --uCCaGGcUCGGGCGGGgAgGGCCg -3' miRNA: 3'- uuuGGaCUaAGCCCGCUCgUgCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 26344 | 0.66 | 0.836275 |
Target: 5'- cAGGCCgGAgUCGGGUuGGCGuucCGGCCg -3' miRNA: 3'- -UUUGGaCUaAGCCCGcUCGU---GCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 51532 | 0.66 | 0.835449 |
Target: 5'- cGGgCUGcUUgGGGUacuugaacuugccGAGCACGGCCUg -3' miRNA: 3'- uUUgGACuAAgCCCG-------------CUCGUGCCGGA- -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 90446 | 0.66 | 0.827941 |
Target: 5'- gAGAUCgcucaggUGGGCG-GCGCGGCCg -3' miRNA: 3'- -UUUGGacuaa--GCCCGCuCGUGCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 91898 | 0.66 | 0.827941 |
Target: 5'- uGGCCgcggcagcGA--UGGGCGGGCGCGGCg- -3' miRNA: 3'- uUUGGa-------CUaaGCCCGCUCGUGCCGga -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 80258 | 0.66 | 0.827941 |
Target: 5'- -cGCCuUGA---GGGCGAGCGaGGCCg -3' miRNA: 3'- uuUGG-ACUaagCCCGCUCGUgCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 42522 | 0.67 | 0.819429 |
Target: 5'- uGGCCUGAUgugUGGcGUGGGCGCaGCUUc -3' miRNA: 3'- uUUGGACUAa--GCC-CGCUCGUGcCGGA- -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 110816 | 0.67 | 0.819429 |
Target: 5'- cGGGCCUagcGUUCGGGUcuGAGCGgGGUCg -3' miRNA: 3'- -UUUGGAc--UAAGCCCG--CUCGUgCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 55560 | 0.67 | 0.801904 |
Target: 5'- ---aCUGGag-GGGgGAGCGCGGCCc -3' miRNA: 3'- uuugGACUaagCCCgCUCGUGCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 33404 | 0.67 | 0.792906 |
Target: 5'- cGACCgcggUGAUgUUGGGCGAGUACGcCCg -3' miRNA: 3'- uUUGG----ACUA-AGCCCGCUCGUGCcGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 122824 | 0.68 | 0.759378 |
Target: 5'- cGAUCUGcguggcgguccgcgaGUUCGGGCccGGGCGgGGCCg -3' miRNA: 3'- uUUGGAC---------------UAAGCCCG--CUCGUgCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 3798 | 0.68 | 0.759378 |
Target: 5'- cGAUCUGcguggcgguccgcgaGUUCGGGCccGGGCGgGGCCg -3' miRNA: 3'- uUUGGAC---------------UAAGCCCG--CUCGUgCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 116282 | 0.68 | 0.745922 |
Target: 5'- gAAGCCgUGGcgCGGGCG-GCuACGGCUg -3' miRNA: 3'- -UUUGG-ACUaaGCCCGCuCG-UGCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 118884 | 0.68 | 0.726367 |
Target: 5'- -cACC--GUUCGGGCG-GUAgGGCCUg -3' miRNA: 3'- uuUGGacUAAGCCCGCuCGUgCCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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