Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24426 | 3' | -57.3 | NC_005264.1 | + | 35261 | 0.69 | 0.704483 |
Target: 5'- aAGACCgaaaacacUGGcGCGGGCGCGGCCg -3' miRNA: 3'- -UUUGGacuaa---GCC-CGCUCGUGCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 126297 | 0.69 | 0.696447 |
Target: 5'- -uGCCgcuUUCGGGC--GCGCGGCCg -3' miRNA: 3'- uuUGGacuAAGCCCGcuCGUGCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 62921 | 0.69 | 0.696447 |
Target: 5'- uAGCCgcg--CGGGCuuGCGCGGCCg -3' miRNA: 3'- uUUGGacuaaGCCCGcuCGUGCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 20901 | 0.69 | 0.696447 |
Target: 5'- gAGGCCUGGcUCGGGCGGcccaguaauuGCAgGGaCCa -3' miRNA: 3'- -UUUGGACUaAGCCCGCU----------CGUgCC-GGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 127918 | 0.69 | 0.686354 |
Target: 5'- --uCCUGAggCGGGCGccaCugGGCCa -3' miRNA: 3'- uuuGGACUaaGCCCGCuc-GugCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 94591 | 0.69 | 0.676216 |
Target: 5'- cAGGCCgcccgCGGcGCGGGCAUGGCUUg -3' miRNA: 3'- -UUUGGacuaaGCC-CGCUCGUGCCGGA- -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 142842 | 0.7 | 0.614927 |
Target: 5'- cAACCgGAUgCGaGCGAGCGCGGUCg -3' miRNA: 3'- uUUGGaCUAaGCcCGCUCGUGCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 120321 | 0.7 | 0.614927 |
Target: 5'- gGGACUaggUGAgUCGGGCGAuGUACGGCg- -3' miRNA: 3'- -UUUGG---ACUaAGCCCGCU-CGUGCCGga -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 1294 | 0.7 | 0.614927 |
Target: 5'- gGGACUaggUGAgUCGGGCGAuGUACGGCg- -3' miRNA: 3'- -UUUGG---ACUaAGCCCGCU-CGUGCCGga -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 148687 | 0.72 | 0.495135 |
Target: 5'- uAGCCUGGUU--GGCGAGCugGGCa- -3' miRNA: 3'- uUUGGACUAAgcCCGCUCGugCCGga -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 5108 | 0.73 | 0.430233 |
Target: 5'- -cGCCUGG---GGGCGAGCugGGaCCUa -3' miRNA: 3'- uuUGGACUaagCCCGCUCGugCC-GGA- -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 124135 | 0.73 | 0.430233 |
Target: 5'- -cGCCUGG---GGGCGAGCugGGaCCUa -3' miRNA: 3'- uuUGGACUaagCCCGCUCGugCC-GGA- -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 98140 | 1.06 | 0.00336 |
Target: 5'- aAAACCUGAUUCGGGCGAGCACGGCCUg -3' miRNA: 3'- -UUUGGACUAAGCCCGCUCGUGCCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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