miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24426 3' -57.3 NC_005264.1 + 1294 0.7 0.614927
Target:  5'- gGGACUaggUGAgUCGGGCGAuGUACGGCg- -3'
miRNA:   3'- -UUUGG---ACUaAGCCCGCU-CGUGCCGga -5'
24426 3' -57.3 NC_005264.1 + 3798 0.68 0.759378
Target:  5'- cGAUCUGcguggcgguccgcgaGUUCGGGCccGGGCGgGGCCg -3'
miRNA:   3'- uUUGGAC---------------UAAGCCCG--CUCGUgCCGGa -5'
24426 3' -57.3 NC_005264.1 + 5108 0.73 0.430233
Target:  5'- -cGCCUGG---GGGCGAGCugGGaCCUa -3'
miRNA:   3'- uuUGGACUaagCCCGCUCGugCC-GGA- -5'
24426 3' -57.3 NC_005264.1 + 20901 0.69 0.696447
Target:  5'- gAGGCCUGGcUCGGGCGGcccaguaauuGCAgGGaCCa -3'
miRNA:   3'- -UUUGGACUaAGCCCGCU----------CGUgCC-GGa -5'
24426 3' -57.3 NC_005264.1 + 26344 0.66 0.836275
Target:  5'- cAGGCCgGAgUCGGGUuGGCGuucCGGCCg -3'
miRNA:   3'- -UUUGGaCUaAGCCCGcUCGU---GCCGGa -5'
24426 3' -57.3 NC_005264.1 + 31519 0.66 0.844422
Target:  5'- --uCCaGGcUCGGGCGGGgAgGGCCg -3'
miRNA:   3'- uuuGGaCUaAGCCCGCUCgUgCCGGa -5'
24426 3' -57.3 NC_005264.1 + 33404 0.67 0.792906
Target:  5'- cGACCgcggUGAUgUUGGGCGAGUACGcCCg -3'
miRNA:   3'- uUUGG----ACUA-AGCCCGCUCGUGCcGGa -5'
24426 3' -57.3 NC_005264.1 + 35261 0.69 0.704483
Target:  5'- aAGACCgaaaacacUGGcGCGGGCGCGGCCg -3'
miRNA:   3'- -UUUGGacuaa---GCC-CGCUCGUGCCGGa -5'
24426 3' -57.3 NC_005264.1 + 42522 0.67 0.819429
Target:  5'- uGGCCUGAUgugUGGcGUGGGCGCaGCUUc -3'
miRNA:   3'- uUUGGACUAa--GCC-CGCUCGUGcCGGA- -5'
24426 3' -57.3 NC_005264.1 + 47194 0.66 0.852378
Target:  5'- cAAGCCUGGgaUGaGCGGGgcCACGGCCg -3'
miRNA:   3'- -UUUGGACUaaGCcCGCUC--GUGCCGGa -5'
24426 3' -57.3 NC_005264.1 + 51532 0.66 0.835449
Target:  5'- cGGgCUGcUUgGGGUacuugaacuugccGAGCACGGCCUg -3'
miRNA:   3'- uUUgGACuAAgCCCG-------------CUCGUGCCGGA- -5'
24426 3' -57.3 NC_005264.1 + 55560 0.67 0.801904
Target:  5'- ---aCUGGag-GGGgGAGCGCGGCCc -3'
miRNA:   3'- uuugGACUaagCCCgCUCGUGCCGGa -5'
24426 3' -57.3 NC_005264.1 + 62921 0.69 0.696447
Target:  5'- uAGCCgcg--CGGGCuuGCGCGGCCg -3'
miRNA:   3'- uUUGGacuaaGCCCGcuCGUGCCGGa -5'
24426 3' -57.3 NC_005264.1 + 80258 0.66 0.827941
Target:  5'- -cGCCuUGA---GGGCGAGCGaGGCCg -3'
miRNA:   3'- uuUGG-ACUaagCCCGCUCGUgCCGGa -5'
24426 3' -57.3 NC_005264.1 + 90446 0.66 0.827941
Target:  5'- gAGAUCgcucaggUGGGCG-GCGCGGCCg -3'
miRNA:   3'- -UUUGGacuaa--GCCCGCuCGUGCCGGa -5'
24426 3' -57.3 NC_005264.1 + 91898 0.66 0.827941
Target:  5'- uGGCCgcggcagcGA--UGGGCGGGCGCGGCg- -3'
miRNA:   3'- uUUGGa-------CUaaGCCCGCUCGUGCCGga -5'
24426 3' -57.3 NC_005264.1 + 94591 0.69 0.676216
Target:  5'- cAGGCCgcccgCGGcGCGGGCAUGGCUUg -3'
miRNA:   3'- -UUUGGacuaaGCC-CGCUCGUGCCGGA- -5'
24426 3' -57.3 NC_005264.1 + 98140 1.06 0.00336
Target:  5'- aAAACCUGAUUCGGGCGAGCACGGCCUg -3'
miRNA:   3'- -UUUGGACUAAGCCCGCUCGUGCCGGA- -5'
24426 3' -57.3 NC_005264.1 + 110816 0.67 0.819429
Target:  5'- cGGGCCUagcGUUCGGGUcuGAGCGgGGUCg -3'
miRNA:   3'- -UUUGGAc--UAAGCCCG--CUCGUgCCGGa -5'
24426 3' -57.3 NC_005264.1 + 113192 0.66 0.860133
Target:  5'- gGAACCcGAcgucCGGGuCGAGCACcuuGGCCc -3'
miRNA:   3'- -UUUGGaCUaa--GCCC-GCUCGUG---CCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.