miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24426 3' -57.3 NC_005264.1 + 114097 0.66 0.852378
Target:  5'- gGAGCUUGuagUCGGGCcAGU-CGGCCc -3'
miRNA:   3'- -UUUGGACua-AGCCCGcUCGuGCCGGa -5'
24426 3' -57.3 NC_005264.1 + 116282 0.68 0.745922
Target:  5'- gAAGCCgUGGcgCGGGCG-GCuACGGCUg -3'
miRNA:   3'- -UUUGG-ACUaaGCCCGCuCG-UGCCGGa -5'
24426 3' -57.3 NC_005264.1 + 118420 0.66 0.859367
Target:  5'- uAGGCCUcggGAUUauGGUGAGCAaguacauCGGCCa -3'
miRNA:   3'- -UUUGGA---CUAAgcCCGCUCGU-------GCCGGa -5'
24426 3' -57.3 NC_005264.1 + 118884 0.68 0.726367
Target:  5'- -cACC--GUUCGGGCG-GUAgGGCCUg -3'
miRNA:   3'- uuUGGacUAAGCCCGCuCGUgCCGGA- -5'
24426 3' -57.3 NC_005264.1 + 120321 0.7 0.614927
Target:  5'- gGGACUaggUGAgUCGGGCGAuGUACGGCg- -3'
miRNA:   3'- -UUUGG---ACUaAGCCCGCU-CGUGCCGga -5'
24426 3' -57.3 NC_005264.1 + 122824 0.68 0.759378
Target:  5'- cGAUCUGcguggcgguccgcgaGUUCGGGCccGGGCGgGGCCg -3'
miRNA:   3'- uUUGGAC---------------UAAGCCCG--CUCGUgCCGGa -5'
24426 3' -57.3 NC_005264.1 + 124135 0.73 0.430233
Target:  5'- -cGCCUGG---GGGCGAGCugGGaCCUa -3'
miRNA:   3'- uuUGGACUaagCCCGCUCGugCC-GGA- -5'
24426 3' -57.3 NC_005264.1 + 126297 0.69 0.696447
Target:  5'- -uGCCgcuUUCGGGC--GCGCGGCCg -3'
miRNA:   3'- uuUGGacuAAGCCCGcuCGUGCCGGa -5'
24426 3' -57.3 NC_005264.1 + 127918 0.69 0.686354
Target:  5'- --uCCUGAggCGGGCGccaCugGGCCa -3'
miRNA:   3'- uuuGGACUaaGCCCGCuc-GugCCGGa -5'
24426 3' -57.3 NC_005264.1 + 141752 0.66 0.860133
Target:  5'- cAGGCCc---UCGGagGCGAGCACGGCa- -3'
miRNA:   3'- -UUUGGacuaAGCC--CGCUCGUGCCGga -5'
24426 3' -57.3 NC_005264.1 + 142842 0.7 0.614927
Target:  5'- cAACCgGAUgCGaGCGAGCGCGGUCg -3'
miRNA:   3'- uUUGGaCUAaGCcCGCUCGUGCCGGa -5'
24426 3' -57.3 NC_005264.1 + 148687 0.72 0.495135
Target:  5'- uAGCCUGGUU--GGCGAGCugGGCa- -3'
miRNA:   3'- uUUGGACUAAgcCCGCUCGugCCGga -5'
24426 3' -57.3 NC_005264.1 + 150546 0.66 0.844422
Target:  5'- --uCCaGGcUCGGGCGGGgAgGGCCg -3'
miRNA:   3'- uuuGGaCUaAGCCCGCUCgUgCCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.