Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24426 | 3' | -57.3 | NC_005264.1 | + | 51532 | 0.66 | 0.835449 |
Target: 5'- cGGgCUGcUUgGGGUacuugaacuugccGAGCACGGCCUg -3' miRNA: 3'- uUUgGACuAAgCCCG-------------CUCGUGCCGGA- -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 114097 | 0.66 | 0.852378 |
Target: 5'- gGAGCUUGuagUCGGGCcAGU-CGGCCc -3' miRNA: 3'- -UUUGGACua-AGCCCGcUCGuGCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 118420 | 0.66 | 0.859367 |
Target: 5'- uAGGCCUcggGAUUauGGUGAGCAaguacauCGGCCa -3' miRNA: 3'- -UUUGGA---CUAAgcCCGCUCGU-------GCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 113192 | 0.66 | 0.860133 |
Target: 5'- gGAACCcGAcgucCGGGuCGAGCACcuuGGCCc -3' miRNA: 3'- -UUUGGaCUaa--GCCC-GCUCGUG---CCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 141752 | 0.66 | 0.860133 |
Target: 5'- cAGGCCc---UCGGagGCGAGCACGGCa- -3' miRNA: 3'- -UUUGGacuaAGCC--CGCUCGUGCCGga -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 126297 | 0.69 | 0.696447 |
Target: 5'- -uGCCgcuUUCGGGC--GCGCGGCCg -3' miRNA: 3'- uuUGGacuAAGCCCGcuCGUGCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 98140 | 1.06 | 0.00336 |
Target: 5'- aAAACCUGAUUCGGGCGAGCACGGCCUg -3' miRNA: 3'- -UUUGGACUAAGCCCGCUCGUGCCGGA- -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 142842 | 0.7 | 0.614927 |
Target: 5'- cAACCgGAUgCGaGCGAGCGCGGUCg -3' miRNA: 3'- uUUGGaCUAaGCcCGCUCGUGCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 94591 | 0.69 | 0.676216 |
Target: 5'- cAGGCCgcccgCGGcGCGGGCAUGGCUUg -3' miRNA: 3'- -UUUGGacuaaGCC-CGCUCGUGCCGGA- -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 20901 | 0.69 | 0.696447 |
Target: 5'- gAGGCCUGGcUCGGGCGGcccaguaauuGCAgGGaCCa -3' miRNA: 3'- -UUUGGACUaAGCCCGCU----------CGUgCC-GGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 90446 | 0.66 | 0.827941 |
Target: 5'- gAGAUCgcucaggUGGGCG-GCGCGGCCg -3' miRNA: 3'- -UUUGGacuaa--GCCCGCuCGUGCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 1294 | 0.7 | 0.614927 |
Target: 5'- gGGACUaggUGAgUCGGGCGAuGUACGGCg- -3' miRNA: 3'- -UUUGG---ACUaAGCCCGCU-CGUGCCGga -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 3798 | 0.68 | 0.759378 |
Target: 5'- cGAUCUGcguggcgguccgcgaGUUCGGGCccGGGCGgGGCCg -3' miRNA: 3'- uUUGGAC---------------UAAGCCCG--CUCGUgCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 127918 | 0.69 | 0.686354 |
Target: 5'- --uCCUGAggCGGGCGccaCugGGCCa -3' miRNA: 3'- uuuGGACUaaGCCCGCuc-GugCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 5108 | 0.73 | 0.430233 |
Target: 5'- -cGCCUGG---GGGCGAGCugGGaCCUa -3' miRNA: 3'- uuUGGACUaagCCCGCUCGugCC-GGA- -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 116282 | 0.68 | 0.745922 |
Target: 5'- gAAGCCgUGGcgCGGGCG-GCuACGGCUg -3' miRNA: 3'- -UUUGG-ACUaaGCCCGCuCG-UGCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 31519 | 0.66 | 0.844422 |
Target: 5'- --uCCaGGcUCGGGCGGGgAgGGCCg -3' miRNA: 3'- uuuGGaCUaAGCCCGCUCgUgCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 150546 | 0.66 | 0.844422 |
Target: 5'- --uCCaGGcUCGGGCGGGgAgGGCCg -3' miRNA: 3'- uuuGGaCUaAGCCCGCUCgUgCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 26344 | 0.66 | 0.836275 |
Target: 5'- cAGGCCgGAgUCGGGUuGGCGuucCGGCCg -3' miRNA: 3'- -UUUGGaCUaAGCCCGcUCGU---GCCGGa -5' |
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24426 | 3' | -57.3 | NC_005264.1 | + | 80258 | 0.66 | 0.827941 |
Target: 5'- -cGCCuUGA---GGGCGAGCGaGGCCg -3' miRNA: 3'- uuUGG-ACUaagCCCGCUCGUgCCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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