miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24426 5' -53.8 NC_005264.1 + 33772 0.65 0.965531
Target:  5'- uCGGGCCUAAACCUauuuucuagCCUggguuccGAACGGCGc -3'
miRNA:   3'- cGUCCGGGUUUGGG---------GGA-------UUUGCUGUa -5'
24426 5' -53.8 NC_005264.1 + 152798 0.65 0.965531
Target:  5'- uCGGGCCUAAACCUauuuucuagCCUggguuccGAACGGCGc -3'
miRNA:   3'- cGUCCGGGUUUGGG---------GGA-------UUUGCUGUa -5'
24426 5' -53.8 NC_005264.1 + 36527 0.65 0.964867
Target:  5'- gGCGGGCgCAGgagccaucggccgcGCgCCCgaAAGCGGCAUg -3'
miRNA:   3'- -CGUCCGgGUU--------------UG-GGGgaUUUGCUGUA- -5'
24426 5' -53.8 NC_005264.1 + 121821 0.66 0.963854
Target:  5'- --cGGCCCucgaccgcugccuggGAGCCCaCCUAAACGGg-- -3'
miRNA:   3'- cguCCGGG---------------UUUGGG-GGAUUUGCUgua -5'
24426 5' -53.8 NC_005264.1 + 2795 0.66 0.963854
Target:  5'- --cGGCCCucgaccgcugccuggGAGCCCaCCUAAACGGg-- -3'
miRNA:   3'- cguCCGGG---------------UUUGGG-GGAUUUGCUgua -5'
24426 5' -53.8 NC_005264.1 + 103042 0.66 0.962472
Target:  5'- aGCAuGGUgCGcuacgcGCCCCCUGcgGGCGACGa -3'
miRNA:   3'- -CGU-CCGgGUu-----UGGGGGAU--UUGCUGUa -5'
24426 5' -53.8 NC_005264.1 + 149262 0.66 0.962472
Target:  5'- -gGGGCCgAAGCCCUUUGccAGCGAgAg -3'
miRNA:   3'- cgUCCGGgUUUGGGGGAU--UUGCUgUa -5'
24426 5' -53.8 NC_005264.1 + 29173 0.66 0.962472
Target:  5'- aGCAGGCguuCCucuAGCUCCCcAggUGGCGUg -3'
miRNA:   3'- -CGUCCG---GGu--UUGGGGGaUuuGCUGUA- -5'
24426 5' -53.8 NC_005264.1 + 91064 0.66 0.958859
Target:  5'- --uGGCCCAcGCUCUCUAGGCGucCGUu -3'
miRNA:   3'- cguCCGGGUuUGGGGGAUUUGCu-GUA- -5'
24426 5' -53.8 NC_005264.1 + 39309 0.66 0.958859
Target:  5'- cGCGGacGCCCAGucCCCCCUccgcucGCGACc- -3'
miRNA:   3'- -CGUC--CGGGUUu-GGGGGAuu----UGCUGua -5'
24426 5' -53.8 NC_005264.1 + 158336 0.66 0.958859
Target:  5'- cGCGGacGCCCAGucCCCCCUccgcucGCGACc- -3'
miRNA:   3'- -CGUC--CGGGUUu-GGGGGAuu----UGCUGua -5'
24426 5' -53.8 NC_005264.1 + 62366 0.66 0.955013
Target:  5'- -aGGGCCCuGGCCgCC---GCGACAg -3'
miRNA:   3'- cgUCCGGGuUUGGgGGauuUGCUGUa -5'
24426 5' -53.8 NC_005264.1 + 40504 0.66 0.955013
Target:  5'- -uGGGCcaacCCGAACCCCUUccACGugGUg -3'
miRNA:   3'- cgUCCG----GGUUUGGGGGAuuUGCugUA- -5'
24426 5' -53.8 NC_005264.1 + 46441 0.66 0.954615
Target:  5'- cGCGGGCUCAgcgagAGCCgacgaagaggucuCCCgcGACGGCAg -3'
miRNA:   3'- -CGUCCGGGU-----UUGG-------------GGGauUUGCUGUa -5'
24426 5' -53.8 NC_005264.1 + 18527 0.66 0.954615
Target:  5'- cGgGGGCgCCGucuCCCCCUGAGggcgcgcCGGCGUc -3'
miRNA:   3'- -CgUCCG-GGUuu-GGGGGAUUU-------GCUGUA- -5'
24426 5' -53.8 NC_005264.1 + 156633 0.66 0.952592
Target:  5'- cGUAGGCCCGuucAACagauCCCUAguguaugugaucaacAGCGACGc -3'
miRNA:   3'- -CGUCCGGGU---UUGg---GGGAU---------------UUGCUGUa -5'
24426 5' -53.8 NC_005264.1 + 121216 0.66 0.950931
Target:  5'- uGCGaGCCUAAACCCCU---GCGAgCAUg -3'
miRNA:   3'- -CGUcCGGGUUUGGGGGauuUGCU-GUA- -5'
24426 5' -53.8 NC_005264.1 + 5944 0.66 0.950931
Target:  5'- --cGGCCCGAACCCgcggcguugCCUGuuGACGcACAg -3'
miRNA:   3'- cguCCGGGUUUGGG---------GGAU--UUGC-UGUa -5'
24426 5' -53.8 NC_005264.1 + 2189 0.66 0.950931
Target:  5'- uGCGaGCCUAAACCCCU---GCGAgCAUg -3'
miRNA:   3'- -CGUcCGGGUUUGGGGGauuUGCU-GUA- -5'
24426 5' -53.8 NC_005264.1 + 102161 0.66 0.950931
Target:  5'- cGgAGGCCUuggGAGCCCagCUGcGCGACGa -3'
miRNA:   3'- -CgUCCGGG---UUUGGGg-GAUuUGCUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.